65 items (Oreochromis niloticus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC100693117	Uncharacterized protein LOC100693117 isoform X1. (748 aa)
	hmg20a	High mobility group 20A. (303 aa)
	lef1	Lymphoid enhancer-binding factor 1. (379 aa)
	tcf7	Transcription factor 7. (521 aa)
	LOC100690811	Uncharacterized protein. (450 aa)
	I3KEQ6_ORENI	TOX high mobility group box family member 4 a. (600 aa)
	cic	Capicua transcriptional repressor b. (2718 aa)
	Hmgxb3	HMG box domain containing 3. (1303 aa)
	LOC100698220	Transcription factor 7 like 1b. (604 aa)
	LOC100693400	SRY-box transcription factor 9a. (541 aa)
	LOC100710892	Upstream binding transcription factor, like. (700 aa)
	ENSONIP00000047438	annotation not available (125 aa)
	LOC100704433	Polybromo 1, like. (1657 aa)
	ENSONIP00000049429	TOX high mobility group box family member 2. (568 aa)
	sox7	SRY-box transcription factor 7. (407 aa)
	tcf7l2	Transcription factor 7 like 2. (631 aa)
	LOC102075719	Transcription factor 7-like 1-A isoform X1. (702 aa)
	ENSONIP00000056910	LOW QUALITY PROTEIN: histone-lysine N-methyltransferase 2C. (3073 aa)
	LOC100695857	Thymocyte selection-associated high mobility group box. (524 aa)
	tox4	TOX high mobility group box family member 4 b. (667 aa)
	LOC100693580	SRY-box transcription factor 19b. (307 aa)
	LOC100697510	HMG box domain-containing protein. (471 aa)
	hmg20b	High mobility group 20B. (294 aa)
	ENSONIP00000006264	Capicua transcriptional repressor a. (1718 aa)
	LOC100698682	SRY-box transcription factor 8. (464 aa)
	LOC100699759	SRY-box transcription factor 9b. (503 aa)
	LOC100702822	High mobility group box 1b. (202 aa)
	I3JFU1_ORENI	SRY-box transcription factor 32. (322 aa)
	LOC100700790	Uncharacterized protein. (200 aa)
	ubtf	Upstream binding transcription factor. (742 aa)
	I3KZS2_ORENI	SRY-box transcription factor 2. (292 aa)
	tox3	TOX high mobility group box family member 3. (627 aa)
	LOC100694759	SRY-box transcription factor 6. (804 aa)
	LOC100695872	HMG box domain-containing protein. (779 aa)
	LOC100706071	High mobility group box 1a. (209 aa)
	LOC100705177	HMG box domain-containing protein. (580 aa)
	kmt2d	Lysine (K)-specific methyltransferase 2D. (5041 aa)
	I3K1E6_ORENI	Uncharacterized protein. (536 aa)
	sox30	HMG box domain-containing protein. (353 aa)
	hbp1	HMG-box transcription factor 1. (462 aa)
	hmgxb4	HMG box domain containing 4a. (599 aa)
	pms1	PMS1 homolog 1, mismatch repair system component. (897 aa)
	wdhd1	WD repeat and HMG-box DNA binding protein 1. (1144 aa)
	LOC100691722	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1. (474 aa)
	sox17	SRY-box transcription factor 17. (397 aa)
	LOC100707400	High mobility group box 2a. (214 aa)
	LOC100698408	HMG box domain-containing protein. (500 aa)
	LOC100693663	SRY-box transcription factor 8a. (479 aa)
	Sox13	SRY-box transcription factor 13. (663 aa)
	sox11	Transcription factor SOX. (363 aa)
	sox4	Transcription factor SOX. (340 aa)
	LOC100692790	Transcription factor SOX. (371 aa)
	SOX1	HMG box domain-containing protein. (354 aa)
	SOX14	SRY-box transcription factor 14. (238 aa)
	LOC100700331	HMG box domain-containing protein. (241 aa)
	ssrp1	FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...] (752 aa)
	I3KRY4_ORENI	Polybromo 1. (1678 aa)
	sox5	SRY-box transcription factor 5. (787 aa)
	ENSONIP00000034076	annotation not available (370 aa)
	smarce1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1. (506 aa)
	LOC109194146	Transcription factor 7-like 1 isoform X2. (494 aa)
	LOC100711530	SRY-box transcription factor 18. (565 aa)
	sox10	SRY-box transcription factor 10. (467 aa)
	LOC100694062	Transcription factor SOX. (433 aa)
	tfam	Transcription factor A, mitochondrial. (287 aa)

Your Current Organism:

Oreochromis niloticus

NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSONIP00000034076	LOC100711530	ENSONIP00000034076	ENSONIP00000037434	annotation not available	SRY-box transcription factor 18.	0.410
ENSONIP00000034076	Sox13	ENSONIP00000034076	ENSONIP00000025493	annotation not available	SRY-box transcription factor 13.	0.401
ENSONIP00000034076	lef1	ENSONIP00000034076	ENSONIP00000022068	annotation not available	Lymphoid enhancer-binding factor 1.	0.514
ENSONIP00000034076	sox17	ENSONIP00000034076	ENSONIP00000007734	annotation not available	SRY-box transcription factor 17.	0.410
ENSONIP00000049429	ssrp1	ENSONIP00000049429	ENSONIP00000028153	TOX high mobility group box family member 2.	FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...]	0.488
I3KEQ6_ORENI	ssrp1	ENSONIP00000019601	ENSONIP00000028153	TOX high mobility group box family member 4 a.	FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...]	0.488
I3KRY4_ORENI	LOC100691722	ENSONIP00000029148	ENSONIP00000007934	Polybromo 1.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1.	0.835
I3KRY4_ORENI	smarce1	ENSONIP00000029148	ENSONIP00000035676	Polybromo 1.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1.	0.835
I3KZS2_ORENI	LOC100694759	ENSONIP00000076438	ENSONIP00000065126	SRY-box transcription factor 2.	SRY-box transcription factor 6.	0.403
I3KZS2_ORENI	LOC100698682	ENSONIP00000076438	ENSONIP00000006611	SRY-box transcription factor 2.	SRY-box transcription factor 8.	0.429
I3KZS2_ORENI	sox10	ENSONIP00000076438	ENSONIP00000038269	SRY-box transcription factor 2.	SRY-box transcription factor 10.	0.432
I3KZS2_ORENI	sox17	ENSONIP00000076438	ENSONIP00000007734	SRY-box transcription factor 2.	SRY-box transcription factor 17.	0.409
I3KZS2_ORENI	sox30	ENSONIP00000076438	ENSONIP00000010892	SRY-box transcription factor 2.	HMG box domain-containing protein.	0.435
LOC100690811	ssrp1	ENSONIP00000020741	ENSONIP00000028153	Uncharacterized protein.	FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...]	0.500
LOC100691722	I3KRY4_ORENI	ENSONIP00000007934	ENSONIP00000029148	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1.	Polybromo 1.	0.835
LOC100691722	LOC100700790	ENSONIP00000007934	ENSONIP00000061034	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1.	Uncharacterized protein.	0.444
LOC100691722	LOC100702822	ENSONIP00000007934	ENSONIP00000006916	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1.	High mobility group box 1b.	0.473
LOC100691722	LOC100704433	ENSONIP00000007934	ENSONIP00000048526	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1.	Polybromo 1, like.	0.835
LOC100691722	LOC100706071	ENSONIP00000007934	ENSONIP00000015992	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1.	High mobility group box 1a.	0.473
LOC100691722	LOC100707400	ENSONIP00000007934	ENSONIP00000008510	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1.	High mobility group box 2a.	0.473