(12 nodes) Zinc finger binding to DNA consensus sequence [AT]GATA[AG] network (Oreochromis niloticus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC100705840	GATA binding protein 2a. (458 aa)
	GATA2	GATA binding protein 2. (455 aa)
	gata3	GATA binding protein 3. (443 aa)
	gata4	GATA binding protein 4. (389 aa)
	gata6	GATA binding protein 6. (534 aa)
	rere	Arginine-glutamic acid dipeptide (RE) repeats a. (1546 aa)
	gata5	GATA binding protein 5. (383 aa)
	LOC112841626	Erythroid transcription factor-like isoform X1. (280 aa)
	Mta1	Metastasis associated 1. (764 aa)
	LOC100696076	GATA binding protein 1a. (457 aa)
	trps1	Trichorhinophalangeal syndrome I. (1551 aa)
	mta2	Metastasis associated 1 family, member 2. (667 aa)

Your Current Organism:

Oreochromis niloticus

NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GATA2	LOC100696076	ENSONIP00000023968	ENSONIP00000038387	GATA binding protein 2.	GATA binding protein 1a.	0.421
GATA2	LOC112841626	ENSONIP00000023968	ENSONIP00000080130	GATA binding protein 2.	Erythroid transcription factor-like isoform X1.	0.408
GATA2	trps1	ENSONIP00000023968	ENSONIP00000032745	GATA binding protein 2.	Trichorhinophalangeal syndrome I.	0.420
LOC100696076	GATA2	ENSONIP00000038387	ENSONIP00000023968	GATA binding protein 1a.	GATA binding protein 2.	0.421
LOC100696076	LOC100705840	ENSONIP00000038387	ENSONIP00000025629	GATA binding protein 1a.	GATA binding protein 2a.	0.426
LOC100696076	gata3	ENSONIP00000038387	ENSONIP00000022592	GATA binding protein 1a.	GATA binding protein 3.	0.411
LOC100696076	trps1	ENSONIP00000038387	ENSONIP00000032745	GATA binding protein 1a.	Trichorhinophalangeal syndrome I.	0.452
LOC100705840	LOC100696076	ENSONIP00000025629	ENSONIP00000038387	GATA binding protein 2a.	GATA binding protein 1a.	0.426
LOC100705840	LOC112841626	ENSONIP00000025629	ENSONIP00000080130	GATA binding protein 2a.	Erythroid transcription factor-like isoform X1.	0.410
LOC100705840	gata4	ENSONIP00000025629	ENSONIP00000017042	GATA binding protein 2a.	GATA binding protein 4.	0.415
LOC100705840	gata6	ENSONIP00000025629	ENSONIP00000011820	GATA binding protein 2a.	GATA binding protein 6.	0.439
LOC100705840	trps1	ENSONIP00000025629	ENSONIP00000032745	GATA binding protein 2a.	Trichorhinophalangeal syndrome I.	0.420
LOC112841626	GATA2	ENSONIP00000080130	ENSONIP00000023968	Erythroid transcription factor-like isoform X1.	GATA binding protein 2.	0.408
LOC112841626	LOC100705840	ENSONIP00000080130	ENSONIP00000025629	Erythroid transcription factor-like isoform X1.	GATA binding protein 2a.	0.410
LOC112841626	gata3	ENSONIP00000080130	ENSONIP00000022592	Erythroid transcription factor-like isoform X1.	GATA binding protein 3.	0.412
LOC112841626	trps1	ENSONIP00000080130	ENSONIP00000032745	Erythroid transcription factor-like isoform X1.	Trichorhinophalangeal syndrome I.	0.452
gata3	LOC100696076	ENSONIP00000022592	ENSONIP00000038387	GATA binding protein 3.	GATA binding protein 1a.	0.411
gata3	LOC112841626	ENSONIP00000022592	ENSONIP00000080130	GATA binding protein 3.	Erythroid transcription factor-like isoform X1.	0.412
gata3	gata6	ENSONIP00000022592	ENSONIP00000011820	GATA binding protein 3.	GATA binding protein 6.	0.426
gata3	trps1	ENSONIP00000022592	ENSONIP00000032745	GATA binding protein 3.	Trichorhinophalangeal syndrome I.	0.420