(26 nodes) Transport of the SLBP independent Mature mRNA network (Haplochromis burtoni)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSHBUP00000001166	Uncharacterized protein. (102 aa)
	nup153	Nucleoporin 153. (1526 aa)
	nup107	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (908 aa)
	NUP54	Nucleoporin 54. (621 aa)
	ndc1	NDC1 transmembrane nucleoporin. (663 aa)
	nup160	Nucleoporin 160. (1289 aa)
	ENSHBUP00000007056	Nucleoporin 37. (313 aa)
	nup88	Nucleoporin 88. (719 aa)
	nup85	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (540 aa)
	rae1	Ribonucleic acid export 1. (369 aa)
	nup93	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family. (820 aa)
	nup205	Nucleoporin 205. (1934 aa)
	ENSHBUP00000016048	Uncharacterized protein. (505 aa)
	ENSHBUP00000016099	Peptidase S59 domain-containing protein. (193 aa)
	NUP62	Nucleoporin 62. (562 aa)
	ENSHBUP00000017345	AT hook containing transcription factor 1. (1859 aa)
	nup155	Nucleoporin 155. (1365 aa)
	ranbp2	RAN binding protein 2. (3058 aa)
	nup133	Nucleoporin 133. (1135 aa)
	nup188	Nucleoporin 188. (1632 aa)
	aaas	Achalasia, adrenocortical insufficiency, alacrimia. (520 aa)
	nup43	Nucleoporin 43. (372 aa)
	nup214	Uncharacterized protein. (1830 aa)
	nup50	Nucleoporin 50. (469 aa)
	nup210	Nucleoporin 210. (1884 aa)
	nup58	Nucleoporin 58. (599 aa)

Your Current Organism:

Haplochromis burtoni

NCBI taxonomy Id: 8153
Other names: Astatotilapia burtoni, Chromis burtoni, H. burtoni

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSHBUP00000001166	ENSHBUP00000007056	ENSHBUP00000001166	ENSHBUP00000007056	Uncharacterized protein.	Nucleoporin 37.	0.983
ENSHBUP00000001166	ENSHBUP00000016048	ENSHBUP00000001166	ENSHBUP00000016048	Uncharacterized protein.	Uncharacterized protein.	0.969
ENSHBUP00000001166	ENSHBUP00000016099	ENSHBUP00000001166	ENSHBUP00000016099	Uncharacterized protein.	Peptidase S59 domain-containing protein.	0.969
ENSHBUP00000001166	ENSHBUP00000017345	ENSHBUP00000001166	ENSHBUP00000017345	Uncharacterized protein.	AT hook containing transcription factor 1.	0.984
ENSHBUP00000001166	NUP54	ENSHBUP00000001166	ENSHBUP00000004619	Uncharacterized protein.	Nucleoporin 54.	0.989
ENSHBUP00000001166	NUP62	ENSHBUP00000001166	ENSHBUP00000016945	Uncharacterized protein.	Nucleoporin 62.	0.970
ENSHBUP00000001166	aaas	ENSHBUP00000001166	ENSHBUP00000026302	Uncharacterized protein.	Achalasia, adrenocortical insufficiency, alacrimia.	0.981
ENSHBUP00000001166	ndc1	ENSHBUP00000001166	ENSHBUP00000005331	Uncharacterized protein.	NDC1 transmembrane nucleoporin.	0.988
ENSHBUP00000001166	nup107	ENSHBUP00000001166	ENSHBUP00000002898	Uncharacterized protein.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.988
ENSHBUP00000001166	nup133	ENSHBUP00000001166	ENSHBUP00000025014	Uncharacterized protein.	Nucleoporin 133.	0.980
ENSHBUP00000001166	nup153	ENSHBUP00000001166	ENSHBUP00000001783	Uncharacterized protein.	Nucleoporin 153.	0.949
ENSHBUP00000001166	nup155	ENSHBUP00000001166	ENSHBUP00000019597	Uncharacterized protein.	Nucleoporin 155.	0.999
ENSHBUP00000001166	nup160	ENSHBUP00000001166	ENSHBUP00000006035	Uncharacterized protein.	Nucleoporin 160.	0.980
ENSHBUP00000001166	nup188	ENSHBUP00000001166	ENSHBUP00000025837	Uncharacterized protein.	Nucleoporin 188.	0.985
ENSHBUP00000001166	nup205	ENSHBUP00000001166	ENSHBUP00000014869	Uncharacterized protein.	Nucleoporin 205.	0.999
ENSHBUP00000001166	nup210	ENSHBUP00000001166	ENSHBUP00000034266	Uncharacterized protein.	Nucleoporin 210.	0.999
ENSHBUP00000001166	nup214	ENSHBUP00000001166	ENSHBUP00000032471	Uncharacterized protein.	Uncharacterized protein.	0.987
ENSHBUP00000001166	nup43	ENSHBUP00000001166	ENSHBUP00000027523	Uncharacterized protein.	Nucleoporin 43.	0.999
ENSHBUP00000001166	nup50	ENSHBUP00000001166	ENSHBUP00000033530	Uncharacterized protein.	Nucleoporin 50.	0.996
ENSHBUP00000001166	nup58	ENSHBUP00000001166	ENSHBUP00000035401	Uncharacterized protein.	Nucleoporin 58.	0.981