(11 nodes) Ctf18 RFC-like complex, and DNA clamp unloading network (Haplochromis burtoni)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSHBUP00000001804	RFC1 domain-containing protein. (135 aa)
	rfc1	BRCT domain-containing protein. (471 aa)
	rfc3	Replication factor C (activator 1) 3. (356 aa)
	rfc5	Replication factor C (activator 1) 5. (335 aa)
	dscc1	DNA replication and sister chromatid cohesion 1. (390 aa)
	rfc2	Replication factor C (activator 1) 2. (356 aa)
	LOC102312405	ATPase family AAA domain containing 5a. (1808 aa)
	rfc4	Replication factor C (activator 1) 4. (357 aa)
	chtf8	CTF8, chromosome transmission fidelity factor 8 homolog (S. cerevisiae). (136 aa)
	chtf18	AAA domain-containing protein. (922 aa)
	rad17	RAD17 checkpoint clamp loader component. (692 aa)

Your Current Organism:

Haplochromis burtoni

NCBI taxonomy Id: 8153
Other names: Astatotilapia burtoni, Chromis burtoni, H. burtoni

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSHBUP00000001804	LOC102312405	ENSHBUP00000001804	ENSHBUP00000012971	RFC1 domain-containing protein.	ATPase family AAA domain containing 5a.	0.547
ENSHBUP00000001804	chtf18	ENSHBUP00000001804	ENSHBUP00000032900	RFC1 domain-containing protein.	AAA domain-containing protein.	0.899
ENSHBUP00000001804	chtf8	ENSHBUP00000001804	ENSHBUP00000028928	RFC1 domain-containing protein.	CTF8, chromosome transmission fidelity factor 8 homolog (S. cerevisiae).	0.775
ENSHBUP00000001804	dscc1	ENSHBUP00000001804	ENSHBUP00000010650	RFC1 domain-containing protein.	DNA replication and sister chromatid cohesion 1.	0.834
ENSHBUP00000001804	rad17	ENSHBUP00000001804	ENSHBUP00000034015	RFC1 domain-containing protein.	RAD17 checkpoint clamp loader component.	0.943
ENSHBUP00000001804	rfc1	ENSHBUP00000001804	ENSHBUP00000001848	RFC1 domain-containing protein.	BRCT domain-containing protein.	0.894
ENSHBUP00000001804	rfc2	ENSHBUP00000001804	ENSHBUP00000012409	RFC1 domain-containing protein.	Replication factor C (activator 1) 2.	0.992
ENSHBUP00000001804	rfc3	ENSHBUP00000001804	ENSHBUP00000005084	RFC1 domain-containing protein.	Replication factor C (activator 1) 3.	0.994
ENSHBUP00000001804	rfc4	ENSHBUP00000001804	ENSHBUP00000022363	RFC1 domain-containing protein.	Replication factor C (activator 1) 4.	0.992
ENSHBUP00000001804	rfc5	ENSHBUP00000001804	ENSHBUP00000009180	RFC1 domain-containing protein.	Replication factor C (activator 1) 5.	0.992
LOC102312405	ENSHBUP00000001804	ENSHBUP00000012971	ENSHBUP00000001804	ATPase family AAA domain containing 5a.	RFC1 domain-containing protein.	0.547
LOC102312405	chtf18	ENSHBUP00000012971	ENSHBUP00000032900	ATPase family AAA domain containing 5a.	AAA domain-containing protein.	0.943
LOC102312405	chtf8	ENSHBUP00000012971	ENSHBUP00000028928	ATPase family AAA domain containing 5a.	CTF8, chromosome transmission fidelity factor 8 homolog (S. cerevisiae).	0.805
LOC102312405	dscc1	ENSHBUP00000012971	ENSHBUP00000010650	ATPase family AAA domain containing 5a.	DNA replication and sister chromatid cohesion 1.	0.887
LOC102312405	rad17	ENSHBUP00000012971	ENSHBUP00000034015	ATPase family AAA domain containing 5a.	RAD17 checkpoint clamp loader component.	0.973
LOC102312405	rfc1	ENSHBUP00000012971	ENSHBUP00000001848	ATPase family AAA domain containing 5a.	BRCT domain-containing protein.	0.547
LOC102312405	rfc2	ENSHBUP00000012971	ENSHBUP00000012409	ATPase family AAA domain containing 5a.	Replication factor C (activator 1) 2.	0.993
LOC102312405	rfc3	ENSHBUP00000012971	ENSHBUP00000005084	ATPase family AAA domain containing 5a.	Replication factor C (activator 1) 3.	0.996
LOC102312405	rfc4	ENSHBUP00000012971	ENSHBUP00000022363	ATPase family AAA domain containing 5a.	Replication factor C (activator 1) 4.	0.995
LOC102312405	rfc5	ENSHBUP00000012971	ENSHBUP00000009180	ATPase family AAA domain containing 5a.	Replication factor C (activator 1) 5.	0.994