6 items (Haplochromis burtoni) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rsl1d1	Ribosomal L1 domain containing 1. (359 aa)
	pes1	Pescadillo. (473 aa)
	bop1	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (742 aa)
	ddx18	RNA helicase. (652 aa)
	wdr12	Ribosome biogenesis protein WDR12; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (421 aa)
	ebna1bp2	EBNA1 binding protein 2. (314 aa)

Your Current Organism:

Haplochromis burtoni

NCBI taxonomy Id: 8153
Other names: Astatotilapia burtoni, Chromis burtoni, H. burtoni

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
bop1	ddx18	ENSHBUP00000011540	ENSHBUP00000021482	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	RNA helicase.	0.995
bop1	ebna1bp2	ENSHBUP00000011540	ENSHBUP00000035280	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	EBNA1 binding protein 2.	0.995
bop1	pes1	ENSHBUP00000011540	ENSHBUP00000006552	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Pescadillo.	0.998
bop1	rsl1d1	ENSHBUP00000011540	ENSHBUP00000000396	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Ribosomal L1 domain containing 1.	0.991
bop1	wdr12	ENSHBUP00000011540	ENSHBUP00000034314	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Ribosome biogenesis protein WDR12; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.998
ddx18	bop1	ENSHBUP00000021482	ENSHBUP00000011540	RNA helicase.	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.995
ddx18	ebna1bp2	ENSHBUP00000021482	ENSHBUP00000035280	RNA helicase.	EBNA1 binding protein 2.	0.996
ddx18	pes1	ENSHBUP00000021482	ENSHBUP00000006552	RNA helicase.	Pescadillo.	0.998
ddx18	rsl1d1	ENSHBUP00000021482	ENSHBUP00000000396	RNA helicase.	Ribosomal L1 domain containing 1.	0.999
ddx18	wdr12	ENSHBUP00000021482	ENSHBUP00000034314	RNA helicase.	Ribosome biogenesis protein WDR12; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.998
ebna1bp2	bop1	ENSHBUP00000035280	ENSHBUP00000011540	EBNA1 binding protein 2.	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.995
ebna1bp2	ddx18	ENSHBUP00000035280	ENSHBUP00000021482	EBNA1 binding protein 2.	RNA helicase.	0.996
ebna1bp2	pes1	ENSHBUP00000035280	ENSHBUP00000006552	EBNA1 binding protein 2.	Pescadillo.	0.999
ebna1bp2	rsl1d1	ENSHBUP00000035280	ENSHBUP00000000396	EBNA1 binding protein 2.	Ribosomal L1 domain containing 1.	0.997
ebna1bp2	wdr12	ENSHBUP00000035280	ENSHBUP00000034314	EBNA1 binding protein 2.	Ribosome biogenesis protein WDR12; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.998
pes1	bop1	ENSHBUP00000006552	ENSHBUP00000011540	Pescadillo.	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.998
pes1	ddx18	ENSHBUP00000006552	ENSHBUP00000021482	Pescadillo.	RNA helicase.	0.998
pes1	ebna1bp2	ENSHBUP00000006552	ENSHBUP00000035280	Pescadillo.	EBNA1 binding protein 2.	0.999
pes1	rsl1d1	ENSHBUP00000006552	ENSHBUP00000000396	Pescadillo.	Ribosomal L1 domain containing 1.	0.994
pes1	wdr12	ENSHBUP00000006552	ENSHBUP00000034314	Pescadillo.	Ribosome biogenesis protein WDR12; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.999