(5 nodes) Mixed, incl. Pseudopodium membrane, and GDP/GTP exchange factor Sec2p network (Haplochromis burtoni)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rab11fip3	RAB11 family interacting protein 3 (class II). (1094 aa)
	rab11fip4	RAB11 family interacting protein 4 (class II) b. (569 aa)
	rab3il1	RAB3A interacting protein (rabin3)-like 1. (468 aa)
	LOC102297348	RAB25, member RAS oncogene family a. (210 aa)
	ENSHBUP00000032783	Uncharacterized protein. (83 aa)

Your Current Organism:

Haplochromis burtoni

NCBI taxonomy Id: 8153
Other names: Astatotilapia burtoni, Chromis burtoni, H. burtoni

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSHBUP00000032783	rab11fip3	ENSHBUP00000032783	ENSHBUP00000004297	Uncharacterized protein.	RAB11 family interacting protein 3 (class II).	0.850
ENSHBUP00000032783	rab11fip4	ENSHBUP00000032783	ENSHBUP00000016708	Uncharacterized protein.	RAB11 family interacting protein 4 (class II) b.	0.850
ENSHBUP00000032783	rab3il1	ENSHBUP00000032783	ENSHBUP00000017220	Uncharacterized protein.	RAB3A interacting protein (rabin3)-like 1.	0.883
LOC102297348	rab11fip3	ENSHBUP00000023241	ENSHBUP00000004297	RAB25, member RAS oncogene family a.	RAB11 family interacting protein 3 (class II).	0.827
LOC102297348	rab11fip4	ENSHBUP00000023241	ENSHBUP00000016708	RAB25, member RAS oncogene family a.	RAB11 family interacting protein 4 (class II) b.	0.827
LOC102297348	rab3il1	ENSHBUP00000023241	ENSHBUP00000017220	RAB25, member RAS oncogene family a.	RAB3A interacting protein (rabin3)-like 1.	0.842
rab11fip3	ENSHBUP00000032783	ENSHBUP00000004297	ENSHBUP00000032783	RAB11 family interacting protein 3 (class II).	Uncharacterized protein.	0.850
rab11fip3	LOC102297348	ENSHBUP00000004297	ENSHBUP00000023241	RAB11 family interacting protein 3 (class II).	RAB25, member RAS oncogene family a.	0.827
rab11fip3	rab3il1	ENSHBUP00000004297	ENSHBUP00000017220	RAB11 family interacting protein 3 (class II).	RAB3A interacting protein (rabin3)-like 1.	0.845
rab11fip4	ENSHBUP00000032783	ENSHBUP00000016708	ENSHBUP00000032783	RAB11 family interacting protein 4 (class II) b.	Uncharacterized protein.	0.850
rab11fip4	LOC102297348	ENSHBUP00000016708	ENSHBUP00000023241	RAB11 family interacting protein 4 (class II) b.	RAB25, member RAS oncogene family a.	0.827
rab11fip4	rab3il1	ENSHBUP00000016708	ENSHBUP00000017220	RAB11 family interacting protein 4 (class II) b.	RAB3A interacting protein (rabin3)-like 1.	0.833
rab3il1	ENSHBUP00000032783	ENSHBUP00000017220	ENSHBUP00000032783	RAB3A interacting protein (rabin3)-like 1.	Uncharacterized protein.	0.883
rab3il1	LOC102297348	ENSHBUP00000017220	ENSHBUP00000023241	RAB3A interacting protein (rabin3)-like 1.	RAB25, member RAS oncogene family a.	0.842
rab3il1	rab11fip3	ENSHBUP00000017220	ENSHBUP00000004297	RAB3A interacting protein (rabin3)-like 1.	RAB11 family interacting protein 3 (class II).	0.845
rab3il1	rab11fip4	ENSHBUP00000017220	ENSHBUP00000016708	RAB3A interacting protein (rabin3)-like 1.	RAB11 family interacting protein 4 (class II) b.	0.833