(16 nodes) VPS9 domain, and GDP binding network (Haplochromis burtoni)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rab5c	RAB5C, member RAS oncogene family. (220 aa)
	LOC102305737	Uncharacterized protein. (1636 aa)
	LOC102290098	Ras and Rab interactor 1a. (572 aa)
	LOC102298584	RAB5A, member RAS oncogene family, a. (216 aa)
	LOC102311643	Uncharacterized protein. (1090 aa)
	LOC102306621	Uncharacterized protein. (222 aa)
	LOC102306830	RAB5B, member RAS oncogene family. (216 aa)
	zhx2	Zinc fingers and homeoboxes 2a. (901 aa)
	eea1	Early endosome antigen 1. (1375 aa)
	gapvd1	GTPase activating protein and VPS9 domains 1. (1484 aa)
	RIN2	Ras and Rab interactor 2. (875 aa)
	als2	Alsin Rho guanine nucleotide exchange factor ALS2 b. (1687 aa)
	rab5a	RAB5A, member RAS oncogene family, b. (216 aa)
	LOC102290698	Ras and Rab interactor 2. (1107 aa)
	ankfy1	Ankyrin repeat and FYVE domain containing 1. (957 aa)
	rabgef1	RAB guanine nucleotide exchange factor (GEF) 1. (504 aa)

Your Current Organism:

Haplochromis burtoni

NCBI taxonomy Id: 8153
Other names: Astatotilapia burtoni, Chromis burtoni, H. burtoni

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC102290098	LOC102298584	ENSHBUP00000002468	ENSHBUP00000002543	Ras and Rab interactor 1a.	RAB5A, member RAS oncogene family, a.	0.648
LOC102290098	LOC102305737	ENSHBUP00000002468	ENSHBUP00000001484	Ras and Rab interactor 1a.	Uncharacterized protein.	0.584
LOC102290098	LOC102306621	ENSHBUP00000002468	ENSHBUP00000005427	Ras and Rab interactor 1a.	Uncharacterized protein.	0.648
LOC102290098	LOC102306830	ENSHBUP00000002468	ENSHBUP00000006690	Ras and Rab interactor 1a.	RAB5B, member RAS oncogene family.	0.648
LOC102290098	als2	ENSHBUP00000002468	ENSHBUP00000024258	Ras and Rab interactor 1a.	Alsin Rho guanine nucleotide exchange factor ALS2 b.	0.584
LOC102290098	gapvd1	ENSHBUP00000002468	ENSHBUP00000013414	Ras and Rab interactor 1a.	GTPase activating protein and VPS9 domains 1.	0.607
LOC102290098	rab5a	ENSHBUP00000002468	ENSHBUP00000025707	Ras and Rab interactor 1a.	RAB5A, member RAS oncogene family, b.	0.648
LOC102290098	rab5c	ENSHBUP00000002468	ENSHBUP00000000820	Ras and Rab interactor 1a.	RAB5C, member RAS oncogene family.	0.648
LOC102290098	rabgef1	ENSHBUP00000002468	ENSHBUP00000033054	Ras and Rab interactor 1a.	RAB guanine nucleotide exchange factor (GEF) 1.	0.713
LOC102290098	zhx2	ENSHBUP00000002468	ENSHBUP00000008485	Ras and Rab interactor 1a.	Zinc fingers and homeoboxes 2a.	0.583
LOC102290698	LOC102298584	ENSHBUP00000029001	ENSHBUP00000002543	Ras and Rab interactor 2.	RAB5A, member RAS oncogene family, a.	0.648
LOC102290698	LOC102305737	ENSHBUP00000029001	ENSHBUP00000001484	Ras and Rab interactor 2.	Uncharacterized protein.	0.584
LOC102290698	LOC102306621	ENSHBUP00000029001	ENSHBUP00000005427	Ras and Rab interactor 2.	Uncharacterized protein.	0.648
LOC102290698	LOC102306830	ENSHBUP00000029001	ENSHBUP00000006690	Ras and Rab interactor 2.	RAB5B, member RAS oncogene family.	0.648
LOC102290698	LOC102311643	ENSHBUP00000029001	ENSHBUP00000005187	Ras and Rab interactor 2.	Uncharacterized protein.	0.550
LOC102290698	als2	ENSHBUP00000029001	ENSHBUP00000024258	Ras and Rab interactor 2.	Alsin Rho guanine nucleotide exchange factor ALS2 b.	0.584
LOC102290698	gapvd1	ENSHBUP00000029001	ENSHBUP00000013414	Ras and Rab interactor 2.	GTPase activating protein and VPS9 domains 1.	0.630
LOC102290698	rab5a	ENSHBUP00000029001	ENSHBUP00000025707	Ras and Rab interactor 2.	RAB5A, member RAS oncogene family, b.	0.648
LOC102290698	rab5c	ENSHBUP00000029001	ENSHBUP00000000820	Ras and Rab interactor 2.	RAB5C, member RAS oncogene family.	0.648
LOC102290698	rabgef1	ENSHBUP00000029001	ENSHBUP00000033054	Ras and Rab interactor 2.	RAB guanine nucleotide exchange factor (GEF) 1.	0.713