5 items (Haplochromis burtoni) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	STX11-2	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (318 aa)
	stxbp5l	Syntaxin binding protein 5-like. (1270 aa)
	STX11-3	Syntaxin 11. (259 aa)
	LOC102303332	Syntaxin binding protein 5b (tomosyn). (1187 aa)
	STX11-4	Syntaxin 11. (281 aa)

Your Current Organism:

Haplochromis burtoni

NCBI taxonomy Id: 8153
Other names: Astatotilapia burtoni, Chromis burtoni, H. burtoni

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC102303332	STX11-2	ENSHBUP00000028768	ENSHBUP00000007356	Syntaxin binding protein 5b (tomosyn).	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.709
LOC102303332	STX11-3	ENSHBUP00000028768	ENSHBUP00000026280	Syntaxin binding protein 5b (tomosyn).	Syntaxin 11.	0.709
LOC102303332	STX11-4	ENSHBUP00000028768	ENSHBUP00000029078	Syntaxin binding protein 5b (tomosyn).	Syntaxin 11.	0.709
STX11-2	LOC102303332	ENSHBUP00000007356	ENSHBUP00000028768	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	Syntaxin binding protein 5b (tomosyn).	0.709
STX11-2	STX11-3	ENSHBUP00000007356	ENSHBUP00000026280	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	Syntaxin 11.	0.788
STX11-2	STX11-4	ENSHBUP00000007356	ENSHBUP00000029078	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	Syntaxin 11.	0.788
STX11-2	stxbp5l	ENSHBUP00000007356	ENSHBUP00000017104	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	Syntaxin binding protein 5-like.	0.709
STX11-3	LOC102303332	ENSHBUP00000026280	ENSHBUP00000028768	Syntaxin 11.	Syntaxin binding protein 5b (tomosyn).	0.709
STX11-3	STX11-2	ENSHBUP00000026280	ENSHBUP00000007356	Syntaxin 11.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.788
STX11-3	stxbp5l	ENSHBUP00000026280	ENSHBUP00000017104	Syntaxin 11.	Syntaxin binding protein 5-like.	0.709
STX11-4	LOC102303332	ENSHBUP00000029078	ENSHBUP00000028768	Syntaxin 11.	Syntaxin binding protein 5b (tomosyn).	0.709
STX11-4	STX11-2	ENSHBUP00000029078	ENSHBUP00000007356	Syntaxin 11.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.788
STX11-4	stxbp5l	ENSHBUP00000029078	ENSHBUP00000017104	Syntaxin 11.	Syntaxin binding protein 5-like.	0.709
stxbp5l	STX11-2	ENSHBUP00000017104	ENSHBUP00000007356	Syntaxin binding protein 5-like.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.709
stxbp5l	STX11-3	ENSHBUP00000017104	ENSHBUP00000026280	Syntaxin binding protein 5-like.	Syntaxin 11.	0.709
stxbp5l	STX11-4	ENSHBUP00000017104	ENSHBUP00000029078	Syntaxin binding protein 5-like.	Syntaxin 11.	0.709