30 items (Haplochromis burtoni) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	exosc3	Exosome component 3. (244 aa)
	gnl3	Guanine nucleotide binding protein-like 3 (nucleolar). (555 aa)
	exosc9	Exosome component 9. (426 aa)
	mak16	Protein MAK16 homolog; Belongs to the MAK16 family. (278 aa)
	exosc2	Exosome component 2. (293 aa)
	mtrex	Mtr4 exosome RNA helicase. (1037 aa)
	exosc4	Exosome component 4. (278 aa)
	nol9	Nucleolar protein 9. (699 aa)
	mphosph6	M-phase phosphoprotein 6. (158 aa)
	eri1	Exoribonuclease 1. (341 aa)
	pes1	Pescadillo. (473 aa)
	rpp40	Ribonuclease P/MRP 40 subunit. (330 aa)
	exosc7	Exosome component 7. (291 aa)
	eif6	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis. (225 aa)
	nsa2	NSA2 ribosome biogenesis homolog (S. cerevisiae). (291 aa)
	rrp15	Ribosomal RNA processing 15 homolog. (244 aa)
	bop1	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (742 aa)
	rpf1	Ribosome production factor 1 homolog. (349 aa)
	ftsj3	pre-rRNA processing protein FTSJ3; Probable methyltransferase involved in the processing of the 34S pre-rRNA to 18S rRNA and in 40S ribosomal subunit formation. Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily. (855 aa)
	eri2	ERI1 exoribonuclease family member 2. (730 aa)
	prkdc	Protein kinase, DNA-activated, catalytic subunit; Belongs to the PI3/PI4-kinase family. (3889 aa)
	ENSHBUP00000016877	Uncharacterized protein. (126 aa)
	kri1	KRI1 homolog. (768 aa)
	urb1	URB1 ribosome biogenesis homolog. (2255 aa)
	wdr12	Ribosome biogenesis protein WDR12; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (421 aa)
	nop9	Uncharacterized protein. (613 aa)
	exosc8	Exosome component 8. (272 aa)
	c1d	C1D nuclear receptor corepressor. (167 aa)
	exosc10	Exosome component 10. (862 aa)
	abt1	Activator of basal transcription 1. (405 aa)

Your Current Organism:

Haplochromis burtoni

NCBI taxonomy Id: 8153
Other names: Astatotilapia burtoni, Chromis burtoni, H. burtoni

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSHBUP00000016877	abt1	ENSHBUP00000016877	ENSHBUP00000033952	Uncharacterized protein.	Activator of basal transcription 1.	0.773
ENSHBUP00000016877	bop1	ENSHBUP00000016877	ENSHBUP00000011540	Uncharacterized protein.	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.877
ENSHBUP00000016877	c1d	ENSHBUP00000016877	ENSHBUP00000032320	Uncharacterized protein.	C1D nuclear receptor corepressor.	0.858
ENSHBUP00000016877	eif6	ENSHBUP00000016877	ENSHBUP00000008259	Uncharacterized protein.	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.	0.800
ENSHBUP00000016877	exosc10	ENSHBUP00000016877	ENSHBUP00000033389	Uncharacterized protein.	Exosome component 10.	0.941
ENSHBUP00000016877	exosc3	ENSHBUP00000016877	ENSHBUP00000034008	Uncharacterized protein.	Exosome component 3.	0.519
ENSHBUP00000016877	exosc4	ENSHBUP00000016877	ENSHBUP00000005219	Uncharacterized protein.	Exosome component 4.	0.424
ENSHBUP00000016877	exosc7	ENSHBUP00000016877	ENSHBUP00000008038	Uncharacterized protein.	Exosome component 7.	0.429
ENSHBUP00000016877	exosc8	ENSHBUP00000016877	ENSHBUP00000025096	Uncharacterized protein.	Exosome component 8.	0.442
ENSHBUP00000016877	exosc9	ENSHBUP00000016877	ENSHBUP00000000639	Uncharacterized protein.	Exosome component 9.	0.414
ENSHBUP00000016877	ftsj3	ENSHBUP00000016877	ENSHBUP00000034637	Uncharacterized protein.	pre-rRNA processing protein FTSJ3; Probable methyltransferase involved in the processing of the 34S pre-rRNA to 18S rRNA and in 40S ribosomal subunit formation. Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.	0.942
ENSHBUP00000016877	gnl3	ENSHBUP00000016877	ENSHBUP00000000182	Uncharacterized protein.	Guanine nucleotide binding protein-like 3 (nucleolar).	0.972
ENSHBUP00000016877	kri1	ENSHBUP00000016877	ENSHBUP00000019078	Uncharacterized protein.	KRI1 homolog.	0.766
ENSHBUP00000016877	mak16	ENSHBUP00000016877	ENSHBUP00000004683	Uncharacterized protein.	Protein MAK16 homolog; Belongs to the MAK16 family.	0.942
ENSHBUP00000016877	mtrex	ENSHBUP00000016877	ENSHBUP00000004844	Uncharacterized protein.	Mtr4 exosome RNA helicase.	0.915
ENSHBUP00000016877	nop9	ENSHBUP00000016877	ENSHBUP00000022999	Uncharacterized protein.	Uncharacterized protein.	0.849
ENSHBUP00000016877	nsa2	ENSHBUP00000016877	ENSHBUP00000009404	Uncharacterized protein.	NSA2 ribosome biogenesis homolog (S. cerevisiae).	0.985
ENSHBUP00000016877	pes1	ENSHBUP00000016877	ENSHBUP00000006552	Uncharacterized protein.	Pescadillo.	0.984
ENSHBUP00000016877	rpf1	ENSHBUP00000016877	ENSHBUP00000011879	Uncharacterized protein.	Ribosome production factor 1 homolog.	0.944
ENSHBUP00000016877	rrp15	ENSHBUP00000016877	ENSHBUP00000009702	Uncharacterized protein.	Ribosomal RNA processing 15 homolog.	0.906