13 items (Haplochromis burtoni) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC102293146	Cyclin-dependent kinase 12. (1352 aa)
	cdk5rap3	CDK5 regulatory subunit associated protein 3. (506 aa)
	cdk13	Cyclin-dependent kinase 13. (1417 aa)
	CUL3	Cullin 3; Belongs to the cullin family. (766 aa)
	cdk15	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (381 aa)
	xrcc6	X-ray repair complementing defective repair in Chinese hamster cells 6. (566 aa)
	haus3	HAUS augmin-like complex, subunit 3. (646 aa)
	fbxo31	F-box protein 31. (585 aa)
	ube3d	Ubiquitin protein ligase E3D. (362 aa)
	LOC102294683	CULLIN_2 domain-containing protein; Belongs to the cullin family. (767 aa)
	zyg11b	Zyg-11 homolog (C. elegans). (744 aa)
	ciz1	Cdkn1a interacting zinc finger protein 1a. (744 aa)
	cdk14	Cyclin-dependent kinase 14; Belongs to the protein kinase superfamily. (470 aa)

Your Current Organism:

Haplochromis burtoni

NCBI taxonomy Id: 8153
Other names: Astatotilapia burtoni, Chromis burtoni, H. burtoni

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CUL3	LOC102294683	ENSHBUP00000017979	ENSHBUP00000030288	Cullin 3; Belongs to the cullin family.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.829
CUL3	cdk14	ENSHBUP00000017979	ENSHBUP00000035140	Cullin 3; Belongs to the cullin family.	Cyclin-dependent kinase 14; Belongs to the protein kinase superfamily.	0.657
CUL3	cdk15	ENSHBUP00000017979	ENSHBUP00000020435	Cullin 3; Belongs to the cullin family.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.657
CUL3	ciz1	ENSHBUP00000017979	ENSHBUP00000034832	Cullin 3; Belongs to the cullin family.	Cdkn1a interacting zinc finger protein 1a.	0.439
CUL3	fbxo31	ENSHBUP00000017979	ENSHBUP00000028944	Cullin 3; Belongs to the cullin family.	F-box protein 31.	0.830
LOC102294683	CUL3	ENSHBUP00000030288	ENSHBUP00000017979	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Cullin 3; Belongs to the cullin family.	0.829
LOC102294683	cdk14	ENSHBUP00000030288	ENSHBUP00000035140	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Cyclin-dependent kinase 14; Belongs to the protein kinase superfamily.	0.657
LOC102294683	cdk15	ENSHBUP00000030288	ENSHBUP00000020435	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.657
LOC102294683	ciz1	ENSHBUP00000030288	ENSHBUP00000034832	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Cdkn1a interacting zinc finger protein 1a.	0.439
LOC102294683	fbxo31	ENSHBUP00000030288	ENSHBUP00000028944	CULLIN_2 domain-containing protein; Belongs to the cullin family.	F-box protein 31.	0.830
cdk14	CUL3	ENSHBUP00000035140	ENSHBUP00000017979	Cyclin-dependent kinase 14; Belongs to the protein kinase superfamily.	Cullin 3; Belongs to the cullin family.	0.657
cdk14	LOC102294683	ENSHBUP00000035140	ENSHBUP00000030288	Cyclin-dependent kinase 14; Belongs to the protein kinase superfamily.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.657
cdk14	xrcc6	ENSHBUP00000035140	ENSHBUP00000021006	Cyclin-dependent kinase 14; Belongs to the protein kinase superfamily.	X-ray repair complementing defective repair in Chinese hamster cells 6.	0.505
cdk15	CUL3	ENSHBUP00000020435	ENSHBUP00000017979	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Cullin 3; Belongs to the cullin family.	0.657
cdk15	LOC102294683	ENSHBUP00000020435	ENSHBUP00000030288	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.657
cdk15	xrcc6	ENSHBUP00000020435	ENSHBUP00000021006	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	X-ray repair complementing defective repair in Chinese hamster cells 6.	0.505
ciz1	CUL3	ENSHBUP00000034832	ENSHBUP00000017979	Cdkn1a interacting zinc finger protein 1a.	Cullin 3; Belongs to the cullin family.	0.439
ciz1	LOC102294683	ENSHBUP00000034832	ENSHBUP00000030288	Cdkn1a interacting zinc finger protein 1a.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.439
fbxo31	CUL3	ENSHBUP00000028944	ENSHBUP00000017979	F-box protein 31.	Cullin 3; Belongs to the cullin family.	0.830
fbxo31	LOC102294683	ENSHBUP00000028944	ENSHBUP00000030288	F-box protein 31.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.830