STRINGSTRING
yod1 yod1 otud3 otud3 vcpip1 vcpip1 otud7a otud7a usp30 usp30 otud7b otud7b tnfaip3 tnfaip3 usp37 usp37
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
yod1YOD1 deubiquitinase. (301 aa)
otud3OTU deubiquitinase 3. (358 aa)
vcpip1Valosin containing protein (p97)/p47 complex interacting protein 1. (1175 aa)
otud7aOTU deubiquitinase 7A. (958 aa)
usp30Ubiquitin carboxyl-terminal hydrolase. (503 aa)
otud7bOTU deubiquitinase 7B. (920 aa)
tnfaip3Tumor necrosis factor, alpha-induced protein 3. (818 aa)
usp37Ubiquitin carboxyl-terminal hydrolase. (958 aa)
Your Current Organism:
Haplochromis burtoni
NCBI taxonomy Id: 8153
Other names: Astatotilapia burtoni, Chromis burtoni, H. burtoni
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