8 items (Haplochromis burtoni) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	htr2b	5-hydroxytryptamine (serotonin) receptor 2B, G protein-coupled. (478 aa)
	npr3	Natriuretic peptide receptor 3. (471 aa)
	scarb1	Scavenger receptor class B, member 1; Belongs to the CD36 family. (507 aa)
	ENSHBUP00000013815	GTP cyclohydrolase 1. (173 aa)
	LOC102307470	Apolipoprotein Eb. (276 aa)
	LOC102304432	GTP cyclohydrolase 2. (221 aa)
	LOC102293680	Protein S100; Belongs to the S-100 family. (95 aa)
	dhfr	Dihydrofolate reductase. (161 aa)

Your Current Organism:

Haplochromis burtoni

NCBI taxonomy Id: 8153
Other names: Astatotilapia burtoni, Chromis burtoni, H. burtoni

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSHBUP00000013815	LOC102304432	ENSHBUP00000013815	ENSHBUP00000021340	GTP cyclohydrolase 1.	GTP cyclohydrolase 2.	0.832
ENSHBUP00000013815	dhfr	ENSHBUP00000013815	ENSHBUP00000034427	GTP cyclohydrolase 1.	Dihydrofolate reductase.	0.454
LOC102304432	ENSHBUP00000013815	ENSHBUP00000021340	ENSHBUP00000013815	GTP cyclohydrolase 2.	GTP cyclohydrolase 1.	0.832
LOC102304432	dhfr	ENSHBUP00000021340	ENSHBUP00000034427	GTP cyclohydrolase 2.	Dihydrofolate reductase.	0.454
LOC102307470	scarb1	ENSHBUP00000016052	ENSHBUP00000007639	Apolipoprotein Eb.	Scavenger receptor class B, member 1; Belongs to the CD36 family.	0.634
dhfr	ENSHBUP00000013815	ENSHBUP00000034427	ENSHBUP00000013815	Dihydrofolate reductase.	GTP cyclohydrolase 1.	0.454
dhfr	LOC102304432	ENSHBUP00000034427	ENSHBUP00000021340	Dihydrofolate reductase.	GTP cyclohydrolase 2.	0.454
scarb1	LOC102307470	ENSHBUP00000007639	ENSHBUP00000016052	Scavenger receptor class B, member 1; Belongs to the CD36 family.	Apolipoprotein Eb.	0.634