(9 nodes) Positive regulation of autophagosome assembly network (Haplochromis burtoni)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rab3gap2	RAB3 GTPase activating protein subunit 2 (non-catalytic). (1271 aa)
	LOC102296537	Sorting nexin 4. (434 aa)
	LOC102294844	PX domain-containing protein. (433 aa)
	wdr45	WD repeat domain 45. (358 aa)
	snx7	Sorting nexin 7. (418 aa)
	lrsam1	Leucine rich repeat and sterile alpha motif containing 1. (737 aa)
	pip4k2a	Phosphatidylinositol-5-phosphate 4-kinase, type II, alpha a. (442 aa)
	snx30	Sorting nexin family member 30. (492 aa)
	PIP4K2B	Phosphatidylinositol-5-phosphate 4-kinase type 2 beta. (412 aa)

Your Current Organism:

Haplochromis burtoni

NCBI taxonomy Id: 8153
Other names: Astatotilapia burtoni, Chromis burtoni, H. burtoni

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC102294844	LOC102296537	ENSHBUP00000007753	ENSHBUP00000001267	PX domain-containing protein.	Sorting nexin 4.	0.830
LOC102294844	snx30	ENSHBUP00000007753	ENSHBUP00000004336	PX domain-containing protein.	Sorting nexin family member 30.	0.952
LOC102294844	snx7	ENSHBUP00000007753	ENSHBUP00000023644	PX domain-containing protein.	Sorting nexin 7.	0.956
LOC102296537	LOC102294844	ENSHBUP00000001267	ENSHBUP00000007753	Sorting nexin 4.	PX domain-containing protein.	0.830
LOC102296537	snx30	ENSHBUP00000001267	ENSHBUP00000004336	Sorting nexin 4.	Sorting nexin family member 30.	0.955
LOC102296537	snx7	ENSHBUP00000001267	ENSHBUP00000023644	Sorting nexin 4.	Sorting nexin 7.	0.956
PIP4K2B	pip4k2a	ENSHBUP00000000222	ENSHBUP00000034771	Phosphatidylinositol-5-phosphate 4-kinase type 2 beta.	Phosphatidylinositol-5-phosphate 4-kinase, type II, alpha a.	0.810
pip4k2a	PIP4K2B	ENSHBUP00000034771	ENSHBUP00000000222	Phosphatidylinositol-5-phosphate 4-kinase, type II, alpha a.	Phosphatidylinositol-5-phosphate 4-kinase type 2 beta.	0.810
snx30	LOC102294844	ENSHBUP00000004336	ENSHBUP00000007753	Sorting nexin family member 30.	PX domain-containing protein.	0.952
snx30	LOC102296537	ENSHBUP00000004336	ENSHBUP00000001267	Sorting nexin family member 30.	Sorting nexin 4.	0.955
snx7	LOC102294844	ENSHBUP00000023644	ENSHBUP00000007753	Sorting nexin 7.	PX domain-containing protein.	0.956
snx7	LOC102296537	ENSHBUP00000023644	ENSHBUP00000001267	Sorting nexin 7.	Sorting nexin 4.	0.956