(53 nodes) Phox homology network (Haplochromis burtoni)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC102290853	Sorting nexin. (627 aa)
	snx20	Sorting nexin 20. (290 aa)
	LOC102303982	Sorting nexin 22. (204 aa)
	LOC102294844	PX domain-containing protein. (433 aa)
	snx29	Sorting nexin 29. (788 aa)
	LOC102303474	Sorting nexin 14. (939 aa)
	KIF16B	Kinesin family member 16B; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (1246 aa)
	snx16	Sorting nexin 16. (364 aa)
	LOC102296537	Sorting nexin 4. (434 aa)
	snx8	Sorting nexin 8a. (516 aa)
	LOC102292451	Phospholipase. (846 aa)
	sh3pxd2b	SH3 and PX domains 2B. (933 aa)
	snx30	Sorting nexin family member 30. (492 aa)
	snx33	Sorting nexin. (557 aa)
	LOC102307447	Sorting nexin 1a. (749 aa)
	LOC102307295	Sorting nexin 19a. (818 aa)
	LOC102304695	Sorting nexin. (541 aa)
	SNX14	Sorting nexin 14. (893 aa)
	snx24	Sorting nexin 24. (173 aa)
	LOC102309516	Uncharacterized protein. (532 aa)
	snx25	Sorting nexin 25. (844 aa)
	sgk3	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily. (492 aa)
	snx15	Sorting nexin 15. (380 aa)
	pld1	Phospholipase. (1056 aa)
	SNX18	Sorting nexin. (587 aa)
	LOC102291533	NADPH oxidase organizer 1a. (525 aa)
	rps6kc1	Ribosomal protein S6 kinase polypeptide 1. (1119 aa)
	ncf4	Neutrophil cytosolic factor 4. (345 aa)
	snx11	PX domain-containing protein. (573 aa)
	snx7	Sorting nexin 7. (418 aa)
	SNX27	Sorting nexin 27. (571 aa)
	LOC102302839	Sorting nexin 12. (172 aa)
	SNX2	Sorting nexin 2. (513 aa)
	snx6	Sorting nexin; Involved in several stages of intracellular trafficking. (407 aa)
	LOC102304430	SH3 and PX domains 2Aa. (1204 aa)
	snx5	Sorting nexin; Involved in several stages of intracellular trafficking. (398 aa)
	ncf1	Neutrophil cytosolic factor 1. (397 aa)
	LOC102302865	NADPH oxidase organizer 1b. (511 aa)
	LOC102306411	Sorting nexin 27a. (563 aa)
	snx13	Sorting nexin 13. (954 aa)
	ENSHBUP00000017834	Sorting nexin 1b. (304 aa)
	LOC102306645	Sorting nexin 19b. (981 aa)
	ENSHBUP00000016208	PX domain-containing protein. (331 aa)
	SH3PXD2A	SH3 and PX domains 2A. (1100 aa)
	snx10	Sorting nexin 10b. (214 aa)
	LOC102309412	Sorting nexin 10a. (210 aa)
	ENSHBUP00000012879	Nischarin. (555 aa)
	pxdc1	PX domain containing 1b. (233 aa)
	snx21	Sorting nexin family member 21. (436 aa)
	pxk	PX domain containing serine/threonine kinase. (518 aa)
	snx3	Sorting nexin 3. (157 aa)
	snx17	Sorting nexin 17. (466 aa)
	LOC102303417	Phospholipase. (1035 aa)

Your Current Organism:

Haplochromis burtoni

NCBI taxonomy Id: 8153
Other names: Astatotilapia burtoni, Chromis burtoni, H. burtoni

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSHBUP00000012879	LOC102292451	ENSHBUP00000012879	ENSHBUP00000001700	Nischarin.	Phospholipase.	0.521
ENSHBUP00000012879	LOC102303417	ENSHBUP00000012879	ENSHBUP00000010085	Nischarin.	Phospholipase.	0.521
ENSHBUP00000012879	pld1	ENSHBUP00000012879	ENSHBUP00000030209	Nischarin.	Phospholipase.	0.521
ENSHBUP00000016208	LOC102302839	ENSHBUP00000016208	ENSHBUP00000022935	PX domain-containing protein.	Sorting nexin 12.	0.445
ENSHBUP00000016208	LOC102309412	ENSHBUP00000016208	ENSHBUP00000014978	PX domain-containing protein.	Sorting nexin 10a.	0.445
ENSHBUP00000016208	snx10	ENSHBUP00000016208	ENSHBUP00000015621	PX domain-containing protein.	Sorting nexin 10b.	0.445
ENSHBUP00000016208	snx11	ENSHBUP00000016208	ENSHBUP00000023761	PX domain-containing protein.	PX domain-containing protein.	0.445
ENSHBUP00000016208	snx3	ENSHBUP00000016208	ENSHBUP00000011821	PX domain-containing protein.	Sorting nexin 3.	0.445
ENSHBUP00000017834	LOC102290853	ENSHBUP00000017834	ENSHBUP00000009474	Sorting nexin 1b.	Sorting nexin.	0.648
ENSHBUP00000017834	LOC102294844	ENSHBUP00000017834	ENSHBUP00000007753	Sorting nexin 1b.	PX domain-containing protein.	0.528
ENSHBUP00000017834	LOC102296537	ENSHBUP00000017834	ENSHBUP00000001267	Sorting nexin 1b.	Sorting nexin 4.	0.528
ENSHBUP00000017834	LOC102302839	ENSHBUP00000017834	ENSHBUP00000022935	Sorting nexin 1b.	Sorting nexin 12.	0.433
ENSHBUP00000017834	LOC102304695	ENSHBUP00000017834	ENSHBUP00000034909	Sorting nexin 1b.	Sorting nexin.	0.646
ENSHBUP00000017834	LOC102306411	ENSHBUP00000017834	ENSHBUP00000018504	Sorting nexin 1b.	Sorting nexin 27a.	0.465
ENSHBUP00000017834	LOC102307447	ENSHBUP00000017834	ENSHBUP00000005825	Sorting nexin 1b.	Sorting nexin 1a.	0.873
ENSHBUP00000017834	LOC102309516	ENSHBUP00000017834	ENSHBUP00000033908	Sorting nexin 1b.	Uncharacterized protein.	0.648
ENSHBUP00000017834	SNX18	ENSHBUP00000017834	ENSHBUP00000028318	Sorting nexin 1b.	Sorting nexin.	0.646
ENSHBUP00000017834	SNX2	ENSHBUP00000017834	ENSHBUP00000022713	Sorting nexin 1b.	Sorting nexin 2.	0.912
ENSHBUP00000017834	SNX27	ENSHBUP00000017834	ENSHBUP00000023227	Sorting nexin 1b.	Sorting nexin 27.	0.465
ENSHBUP00000017834	snx17	ENSHBUP00000017834	ENSHBUP00000011136	Sorting nexin 1b.	Sorting nexin 17.	0.525