12 items (Haplochromis burtoni) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	hgs	Hepatocyte growth factor-regulated tyrosine kinase substrate. (752 aa)
	gga2	Uncharacterized protein. (611 aa)
	gga3	Golgi associated, gamma adaptin ear containing, ARF binding protein 3b. (697 aa)
	stam2	Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2. (517 aa)
	TOM1L2	Target of myb1 like 2 membrane trafficking protein; Belongs to the TOM1 family. (542 aa)
	stam	Signal transducing adaptor molecule (SH3 domain and ITAM motif) 1. (751 aa)
	LOC102294444	Golgi associated, gamma adaptin ear containing, ARF binding protein 3a. (762 aa)
	LOC102307771	Target of myb1 like 2 membrane trafficking protein; Belongs to the TOM1 family. (462 aa)
	LOC102304010	Uncharacterized protein. (660 aa)
	ENSHBUP00000029943	VHS domain-containing protein. (189 aa)
	LOC102310945	Golgi associated, gamma adaptin ear containing, ARF binding protein 1. (662 aa)
	tom1	Target of myb1 membrane trafficking protein. (544 aa)

Your Current Organism:

Haplochromis burtoni

NCBI taxonomy Id: 8153
Other names: Astatotilapia burtoni, Chromis burtoni, H. burtoni

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSHBUP00000029943	LOC102304010	ENSHBUP00000029943	ENSHBUP00000019945	VHS domain-containing protein.	Uncharacterized protein.	0.639
ENSHBUP00000029943	LOC102310945	ENSHBUP00000029943	ENSHBUP00000034046	VHS domain-containing protein.	Golgi associated, gamma adaptin ear containing, ARF binding protein 1.	0.639
ENSHBUP00000029943	gga2	ENSHBUP00000029943	ENSHBUP00000005097	VHS domain-containing protein.	Uncharacterized protein.	0.639
LOC102294444	LOC102304010	ENSHBUP00000014643	ENSHBUP00000019945	Golgi associated, gamma adaptin ear containing, ARF binding protein 3a.	Uncharacterized protein.	0.901
LOC102294444	LOC102310945	ENSHBUP00000014643	ENSHBUP00000034046	Golgi associated, gamma adaptin ear containing, ARF binding protein 3a.	Golgi associated, gamma adaptin ear containing, ARF binding protein 1.	0.879
LOC102294444	gga2	ENSHBUP00000014643	ENSHBUP00000005097	Golgi associated, gamma adaptin ear containing, ARF binding protein 3a.	Uncharacterized protein.	0.908
LOC102294444	hgs	ENSHBUP00000014643	ENSHBUP00000003610	Golgi associated, gamma adaptin ear containing, ARF binding protein 3a.	Hepatocyte growth factor-regulated tyrosine kinase substrate.	0.495
LOC102304010	ENSHBUP00000029943	ENSHBUP00000019945	ENSHBUP00000029943	Uncharacterized protein.	VHS domain-containing protein.	0.639
LOC102304010	LOC102294444	ENSHBUP00000019945	ENSHBUP00000014643	Uncharacterized protein.	Golgi associated, gamma adaptin ear containing, ARF binding protein 3a.	0.901
LOC102304010	LOC102307771	ENSHBUP00000019945	ENSHBUP00000018624	Uncharacterized protein.	Target of myb1 like 2 membrane trafficking protein; Belongs to the TOM1 family.	0.639
LOC102304010	LOC102310945	ENSHBUP00000019945	ENSHBUP00000034046	Uncharacterized protein.	Golgi associated, gamma adaptin ear containing, ARF binding protein 1.	0.811
LOC102304010	TOM1L2	ENSHBUP00000019945	ENSHBUP00000010240	Uncharacterized protein.	Target of myb1 like 2 membrane trafficking protein; Belongs to the TOM1 family.	0.639
LOC102304010	gga2	ENSHBUP00000019945	ENSHBUP00000005097	Uncharacterized protein.	Uncharacterized protein.	0.835
LOC102304010	gga3	ENSHBUP00000019945	ENSHBUP00000009548	Uncharacterized protein.	Golgi associated, gamma adaptin ear containing, ARF binding protein 3b.	0.901
LOC102304010	tom1	ENSHBUP00000019945	ENSHBUP00000034186	Uncharacterized protein.	Target of myb1 membrane trafficking protein.	0.639
LOC102307771	LOC102304010	ENSHBUP00000018624	ENSHBUP00000019945	Target of myb1 like 2 membrane trafficking protein; Belongs to the TOM1 family.	Uncharacterized protein.	0.639
LOC102307771	LOC102310945	ENSHBUP00000018624	ENSHBUP00000034046	Target of myb1 like 2 membrane trafficking protein; Belongs to the TOM1 family.	Golgi associated, gamma adaptin ear containing, ARF binding protein 1.	0.639
LOC102307771	gga2	ENSHBUP00000018624	ENSHBUP00000005097	Target of myb1 like 2 membrane trafficking protein; Belongs to the TOM1 family.	Uncharacterized protein.	0.639
LOC102310945	ENSHBUP00000029943	ENSHBUP00000034046	ENSHBUP00000029943	Golgi associated, gamma adaptin ear containing, ARF binding protein 1.	VHS domain-containing protein.	0.639
LOC102310945	LOC102294444	ENSHBUP00000034046	ENSHBUP00000014643	Golgi associated, gamma adaptin ear containing, ARF binding protein 1.	Golgi associated, gamma adaptin ear containing, ARF binding protein 3a.	0.879