11 items (Haplochromis burtoni) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC102290935	Zgc:77486. (218 aa)
	tnfaip3	Tumor necrosis factor, alpha-induced protein 3. (818 aa)
	rabgef1	RAB guanine nucleotide exchange factor (GEF) 1. (504 aa)
	LOC102305519	Uncharacterized protein. (238 aa)
	LOC102292115	Uncharacterized protein. (460 aa)
	zfand5	Zinc finger, AN1-type domain 5a. (208 aa)
	LOC102312841	Zinc finger, AN1-type domain 3. (230 aa)
	LOC102307660	RAB guanine nucleotide exchange factor (GEF) 1, like. (504 aa)
	LOC102308986	Uncharacterized protein. (227 aa)
	otud7a	OTU deubiquitinase 7A. (958 aa)
	otud7b	OTU deubiquitinase 7B. (920 aa)

Your Current Organism:

Haplochromis burtoni

NCBI taxonomy Id: 8153
Other names: Astatotilapia burtoni, Chromis burtoni, H. burtoni

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC102292115	LOC102307660	ENSHBUP00000006594	ENSHBUP00000000655	Uncharacterized protein.	RAB guanine nucleotide exchange factor (GEF) 1, like.	0.684
LOC102292115	rabgef1	ENSHBUP00000006594	ENSHBUP00000033054	Uncharacterized protein.	RAB guanine nucleotide exchange factor (GEF) 1.	0.683
LOC102307660	LOC102292115	ENSHBUP00000000655	ENSHBUP00000006594	RAB guanine nucleotide exchange factor (GEF) 1, like.	Uncharacterized protein.	0.684
LOC102307660	rabgef1	ENSHBUP00000000655	ENSHBUP00000033054	RAB guanine nucleotide exchange factor (GEF) 1, like.	RAB guanine nucleotide exchange factor (GEF) 1.	0.675
otud7a	tnfaip3	ENSHBUP00000012845	ENSHBUP00000029267	OTU deubiquitinase 7A.	Tumor necrosis factor, alpha-induced protein 3.	0.566
otud7b	tnfaip3	ENSHBUP00000026285	ENSHBUP00000029267	OTU deubiquitinase 7B.	Tumor necrosis factor, alpha-induced protein 3.	0.566
rabgef1	LOC102292115	ENSHBUP00000033054	ENSHBUP00000006594	RAB guanine nucleotide exchange factor (GEF) 1.	Uncharacterized protein.	0.683
rabgef1	LOC102307660	ENSHBUP00000033054	ENSHBUP00000000655	RAB guanine nucleotide exchange factor (GEF) 1.	RAB guanine nucleotide exchange factor (GEF) 1, like.	0.675
tnfaip3	otud7a	ENSHBUP00000029267	ENSHBUP00000012845	Tumor necrosis factor, alpha-induced protein 3.	OTU deubiquitinase 7A.	0.566
tnfaip3	otud7b	ENSHBUP00000029267	ENSHBUP00000026285	Tumor necrosis factor, alpha-induced protein 3.	OTU deubiquitinase 7B.	0.566