17 items (Haplochromis burtoni) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC102292627	Ataxin 3. (273 aa)
	LOC102314666	Ubiquitin-like domain-containing protein. (131 aa)
	spata5l1	Spermatogenesis associated 5-like 1. (748 aa)
	kxd1	KxDL motif containing 1. (184 aa)
	uba52	Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
	LOC102302180	Uncharacterized protein. (471 aa)
	ubb	Ubiquitin-like domain-containing protein. (54 aa)
	SPATA5	Spermatogenesis associated 5. (901 aa)
	aspdh	Aspartate dehydrogenase domain containing. (278 aa)
	RAD23B	RAD23 homolog B, nucleotide excision repair protein. (379 aa)
	rad23a	RAD23 homolog A, nucleotide excision repair protein a. (378 aa)
	LOC102292797	Zgc:136908; Belongs to the AAA ATPase family. (806 aa)
	josd2	Josephin domain containing 2. (183 aa)
	prkn	E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins; Belongs to the RBR family. Parkin subfamily. (432 aa)
	vcp	Valosin containing protein; Belongs to the AAA ATPase family. (806 aa)
	rps27a	Ribosomal protein S27a. (156 aa)
	josd1	Josephin domain containing 1. (264 aa)

Your Current Organism:

Haplochromis burtoni

NCBI taxonomy Id: 8153
Other names: Astatotilapia burtoni, Chromis burtoni, H. burtoni

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC102292627	LOC102292797	ENSHBUP00000033676	ENSHBUP00000013417	Ataxin 3.	Zgc:136908; Belongs to the AAA ATPase family.	0.962
LOC102292627	LOC102302180	ENSHBUP00000033676	ENSHBUP00000025552	Ataxin 3.	Uncharacterized protein.	0.888
LOC102292627	LOC102314666	ENSHBUP00000033676	ENSHBUP00000031002	Ataxin 3.	Ubiquitin-like domain-containing protein.	0.956
LOC102292627	RAD23B	ENSHBUP00000033676	ENSHBUP00000016595	Ataxin 3.	RAD23 homolog B, nucleotide excision repair protein.	0.888
LOC102292627	SPATA5	ENSHBUP00000033676	ENSHBUP00000018457	Ataxin 3.	Spermatogenesis associated 5.	0.950
LOC102292627	josd1	ENSHBUP00000033676	ENSHBUP00000035167	Ataxin 3.	Josephin domain containing 1.	0.549
LOC102292627	josd2	ENSHBUP00000033676	ENSHBUP00000011875	Ataxin 3.	Josephin domain containing 2.	0.644
LOC102292627	prkn	ENSHBUP00000033676	ENSHBUP00000010501	Ataxin 3.	E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins; Belongs to the RBR family. Parkin subfamily.	0.998
LOC102292627	rad23a	ENSHBUP00000033676	ENSHBUP00000014459	Ataxin 3.	RAD23 homolog A, nucleotide excision repair protein a.	0.888
LOC102292627	rps27a	ENSHBUP00000033676	ENSHBUP00000002167	Ataxin 3.	Ribosomal protein S27a.	0.958
LOC102292627	spata5l1	ENSHBUP00000033676	ENSHBUP00000028532	Ataxin 3.	Spermatogenesis associated 5-like 1.	0.950
LOC102292627	uba52	ENSHBUP00000033676	ENSHBUP00000026409	Ataxin 3.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.879
LOC102292627	ubb	ENSHBUP00000033676	ENSHBUP00000019517	Ataxin 3.	Ubiquitin-like domain-containing protein.	0.879
LOC102292627	vcp	ENSHBUP00000033676	ENSHBUP00000008673	Ataxin 3.	Valosin containing protein; Belongs to the AAA ATPase family.	0.962
LOC102292797	LOC102292627	ENSHBUP00000013417	ENSHBUP00000033676	Zgc:136908; Belongs to the AAA ATPase family.	Ataxin 3.	0.962
LOC102292797	LOC102302180	ENSHBUP00000013417	ENSHBUP00000025552	Zgc:136908; Belongs to the AAA ATPase family.	Uncharacterized protein.	0.823
LOC102292797	LOC102314666	ENSHBUP00000013417	ENSHBUP00000031002	Zgc:136908; Belongs to the AAA ATPase family.	Ubiquitin-like domain-containing protein.	0.951
LOC102292797	RAD23B	ENSHBUP00000013417	ENSHBUP00000016595	Zgc:136908; Belongs to the AAA ATPase family.	RAD23 homolog B, nucleotide excision repair protein.	0.823
LOC102292797	prkn	ENSHBUP00000013417	ENSHBUP00000010501	Zgc:136908; Belongs to the AAA ATPase family.	E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins; Belongs to the RBR family. Parkin subfamily.	0.689
LOC102292797	rad23a	ENSHBUP00000013417	ENSHBUP00000014459	Zgc:136908; Belongs to the AAA ATPase family.	RAD23 homolog A, nucleotide excision repair protein a.	0.823