STRINGSTRING
LOC102288768 LOC102288768 abraxas1 abraxas1 LOC102290216 LOC102290216 polq polq tp53bp1 tp53bp1 ENSHBUP00000001804 ENSHBUP00000001804 rfc1 rfc1 rmi2 rmi2 rps27a rps27a ENSHBUP00000002798 ENSHBUP00000002798 brca1 brca1 cdk2 cdk2 babam1 babam1 ENSHBUP00000004241 ENSHBUP00000004241 xrcc3 xrcc3 ENSHBUP00000005048 ENSHBUP00000005048 ENSHBUP00000005062 ENSHBUP00000005062 rfc3 rfc3 ccna1 ccna1 ENSHBUP00000005490 ENSHBUP00000005490 tdrd3 tdrd3 parp2 parp2 ube2v2 ube2v2 LOC102290507 LOC102290507 ankrd12 ankrd12 pold3 pold3 pole2 pole2 polk polk RPA1 RPA1 ppp4c ppp4c pole4 pole4 ENSHBUP00000008246 ENSHBUP00000008246 rmi1 rmi1 rad51ap1 rad51ap1 slf1 slf1 parp1 parp1 ENSHBUP00000009123 ENSHBUP00000009123 ENSHBUP00000009143 ENSHBUP00000009143 rfc5 rfc5 pold2 pold2 mus81 mus81 uimc1 uimc1 SLX1 SLX1 rhno1 rhno1 babam2 babam2 ENSHBUP00000011390 ENSHBUP00000011390 parp3 parp3 rfc2 rfc2 gen1 gen1 LOC102299037 LOC102299037 atr atr topbp1 topbp1 ENSHBUP00000013671 ENSHBUP00000013671 LOC102289514 LOC102289514 blm blm pold4 pold4 LOC102294941 LOC102294941 top3a top3a rnf8 rnf8 pold1 pold1 cdca7 cdca7 exd2 exd2 polh polh meiob meiob sirt6 sirt6 ubb ubb rnf169 rnf169 abl1 abl1 kat5 kat5 ankrd11 ankrd11 rad9b rad9b brca2 brca2 rfc4 rfc4 rad50 rad50 SUMO3 SUMO3 hus1 hus1 LOC102289538 LOC102289538 ENSHBUP00000023288 ENSHBUP00000023288 ENSHBUP00000023290 ENSHBUP00000023290 timeless timeless nbn nbn ube2i ube2i LOC102308989 LOC102308989 ENSHBUP00000024446 ENSHBUP00000024446 RCBTB1 RCBTB1 pias4 pias4 LOC102312440 LOC102312440 LOC102313827 LOC102313827 LOC102291787 LOC102291787 rad51 rad51 spidr spidr ENSHBUP00000025640 ENSHBUP00000025640 pole pole LOC102293513 LOC102293513 rnf168 rnf168 uba52 uba52 rpa2 rpa2 ENSHBUP00000026636 ENSHBUP00000026636 kxd1 kxd1 xrcc2 xrcc2 nsd2 nsd2 ENSHBUP00000027528 ENSHBUP00000027528 rad9a rad9a ppp4r2 ppp4r2 sumo2 sumo2 ENSHBUP00000028115 ENSHBUP00000028115 fen1 fen1 ENSHBUP00000029115 ENSHBUP00000029115 LOC102311858 LOC102311858 atrip atrip lig3 lig3 rad51d rad51d pcna pcna exo1 exo1 rpa3 rpa3 palb2 palb2 rbbp8 rbbp8 chek1 chek1 slx4 slx4 LOC102314666 LOC102314666 mdc1 mdc1 eme2 eme2 rpa1 rpa1 xrcc1 xrcc1 dna2 dna2 rad1 rad1 mre11 mre11 sirt7 sirt7 recql4 recql4 ccna2 ccna2 eme1 eme1 cdca7l cdca7l LOC102297614 LOC102297614 ENSHBUP00000033958 ENSHBUP00000033958 rad17 rad17
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC102288768Regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2. (527 aa)
abraxas1Abraxas 1, BRCA1 A complex subunit. (346 aa)
LOC102290216Histone H2A; Belongs to the histone H2A family. (138 aa)
polqPolymerase (DNA directed), theta. (2129 aa)
tp53bp1Tumor protein p53 binding protein, 1. (1710 aa)
ENSHBUP00000001804RFC1 domain-containing protein. (135 aa)
rfc1BRCT domain-containing protein. (471 aa)
rmi2RecQ mediated genome instability 2. (146 aa)
rps27aRibosomal protein S27a. (156 aa)
ENSHBUP00000002798Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (93 aa)
brca1Uncharacterized protein. (1388 aa)
cdk2Cyclin-dependent kinase 2; Belongs to the protein kinase superfamily. (298 aa)
babam1BRISC and BRCA1 A complex member 1. (378 aa)
ENSHBUP00000004241Polymerase (DNA directed), epsilon 3 (p17 subunit). (147 aa)
xrcc3DNA repair protein; Involved in the homologous recombination repair (HRR) pathway of double-stranded DNA, thought to repair chromosomal fragmentation, translocations and deletions; Belongs to the RecA family. RAD51 subfamily. (336 aa)
ENSHBUP00000005048TAN domain-containing protein. (177 aa)
ENSHBUP00000005062Uncharacterized protein. (143 aa)
rfc3Replication factor C (activator 1) 3. (356 aa)
ccna1Cyclin A1; Belongs to the cyclin family. (398 aa)
ENSHBUP00000005490Reverse transcriptase domain-containing protein. (348 aa)
tdrd3Tudor domain containing 3. (780 aa)
parp2Poly [ADP-ribose] polymerase. (528 aa)
ube2v2Ubiquitin-conjugating enzyme E2 variant 2. (145 aa)
LOC102290507Uncharacterized protein. (429 aa)
ankrd12Ankyrin repeat domain 12. (1951 aa)
pold3Polymerase (DNA-directed), delta 3, accessory subunit. (444 aa)
pole2DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family. (532 aa)
polkPolymerase (DNA directed) kappa. (875 aa)
RPA1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (557 aa)
ppp4cSerine/threonine-protein phosphatase. (311 aa)
pole4Polymerase (DNA-directed), epsilon 4, accessory subunit. (129 aa)
ENSHBUP00000008246Uncharacterized protein. (117 aa)
rmi1RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae). (679 aa)
rad51ap1RAD51 associated protein 1. (331 aa)
slf1SMC5-SMC6 complex localization factor 1. (885 aa)
parp1Poly [ADP-ribose] polymerase; Poly-ADP-ribosyltransferase that mediates poly-ADP- ribosylation of proteins and plays a key role in DNA repair. (1014 aa)
ENSHBUP00000009123Uncharacterized protein. (264 aa)
ENSHBUP00000009143AAA_23 domain-containing protein. (92 aa)
rfc5Replication factor C (activator 1) 5. (335 aa)
pold2Polymerase (DNA directed), delta 2, regulatory subunit. (481 aa)
mus81MUS81 structure-specific endonuclease subunit. (650 aa)
uimc1RAP80_UIM domain-containing protein. (848 aa)
SLX1Structure-specific endonuclease subunit SLX1; Catalytic subunit of the SLX1-SLX4 structure-specific endonuclease that resolves DNA secondary structures generated during DNA repair and recombination. Has endonuclease activity towards branched DNA substrates, introducing single-strand cuts in duplex DNA close to junctions with ss-DNA. (256 aa)
rhno1Si:ch73-352p4.5. (295 aa)
babam2BRISC and BRCA1 A complex member 2. (400 aa)
ENSHBUP00000011390BRCA1/BRCA2-containing complex, subunit 3. (266 aa)
parp3Poly [ADP-ribose] polymerase. (559 aa)
rfc2Replication factor C (activator 1) 2. (356 aa)
gen1Uncharacterized protein. (887 aa)
LOC102299037UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (158 aa)
atrATR serine/threonine kinase; Belongs to the PI3/PI4-kinase family. (3139 aa)
topbp1DNA topoisomerase II binding protein 1. (1538 aa)
ENSHBUP00000013671Reverse transcriptase domain-containing protein. (397 aa)
LOC102289514UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (182 aa)
blmBLM RecQ like helicase. (1405 aa)
pold4Si:dkey-28b4.7. (107 aa)
LOC102294941Small ubiquitin-related modifier. (96 aa)
top3aDNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family. (1037 aa)
rnf8E3 ubiquitin-protein ligase RNF8; E3 ubiquitin-protein ligase that plays a key role in DNA damage signaling via 2 distinct roles: by mediating the 'Lys-63'-linked ubiquitination of histones H2A and H2AX and promoting the recruitment of DNA repair proteins at double-strand breaks (DSBs) sites, and by catalyzing 'Lys-48'-linked ubiquitination to remove target proteins from DNA damage sites. Following DNA DSBs, it is recruited to the sites of damage by ATM-phosphorylated MDC1 and catalyzes the 'Lys-63'-linked ubiquitination of histones H2A and H2AX, thereby promoting the formation of TP53 [...] (464 aa)
pold1DNA polymerase. (1129 aa)
cdca7Cell division cycle associated 7a. (401 aa)
exd2Exonuclease 3'-5' domain containing 2. (635 aa)
polhPolymerase (DNA directed), eta. (738 aa)
meiobMethionine sulfoxide reductase B1b. (464 aa)
sirt6Sirtuin 6. (351 aa)
ubbUbiquitin-like domain-containing protein. (54 aa)
rnf169Ring finger protein 169. (585 aa)
abl1Tyrosine-protein kinase. (1104 aa)
kat5Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family. (555 aa)
ankrd11Ankyrin repeat domain 11. (2842 aa)
rad9bRAD9 checkpoint clamp component B. (390 aa)
brca2BRCA2 DNA repair associated. (3303 aa)
rfc4Replication factor C (activator 1) 4. (357 aa)
rad50RAD50 homolog, double strand break repair protein. (1312 aa)
SUMO3Small ubiquitin-related modifier. (94 aa)
hus1Checkpoint protein; Belongs to the HUS1 family. (285 aa)
LOC102289538Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
ENSHBUP00000023288Histone H2B; Belongs to the histone H2B family. (128 aa)
ENSHBUP00000023290Uncharacterized protein. (125 aa)
timelessTimeless circadian clock. (1249 aa)
nbnNibrin. (779 aa)
ube2iUbiquitin-conjugating enzyme E2Ib; Belongs to the ubiquitin-conjugating enzyme family. (158 aa)
LOC102308989ANK_REP_REGION domain-containing protein. (698 aa)
ENSHBUP00000024446Histone H2B; Belongs to the histone H2B family. (135 aa)
RCBTB1RCC1 and BTB domain containing protein 1. (531 aa)
pias4Protein inhibitor of activated STAT, 4a. (507 aa)
LOC102312440Small ubiquitin-related modifier. (94 aa)
LOC102313827Regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1. (591 aa)
LOC102291787Zgc:110269. (388 aa)
rad51DNA repair protein RAD51 homolog; Plays an important role in homologous strand exchange, a key step in DNA repair through homologous recombination. Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Catalyzes the recognition of homology and strand exchange between homologous DNA partners to form a joint molecule between a processed DNA break and the repair template. Binds to single-stranded DNA in an ATP-dependent manner to form nucleoprotein filaments which are essential for the homology search and strand exchange. Belongs to the RecA family. RAD51 sub [...] (336 aa)
spidrScaffold protein involved in DNA repair. (935 aa)
ENSHBUP00000025640Reverse transcriptase domain-containing protein. (416 aa)
poleDNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2016 aa)
LOC102293513Histone H2B; Belongs to the histone H2B family. (116 aa)
rnf168Ring finger protein 168. (419 aa)
uba52Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
rpa2Replication protein A2. (293 aa)
ENSHBUP00000026636Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (104 aa)
kxd1KxDL motif containing 1. (184 aa)
xrcc2X-ray repair cross complementing 2. (324 aa)
nsd2Nuclear receptor binding SET domain protein 2. (1313 aa)
ENSHBUP00000027528Uncharacterized protein. (252 aa)
rad9aCell cycle checkpoint control protein; Belongs to the rad9 family. (389 aa)
ppp4r2Protein phosphatase 4, regulatory subunit 2b. (434 aa)
sumo2Ubiquitin-like domain-containing protein. (143 aa)
ENSHBUP00000028115Reverse transcriptase domain-containing protein. (365 aa)
fen1Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...] (380 aa)
ENSHBUP00000029115Uncharacterized protein. (166 aa)
LOC102311858Ubiquitin-conjugating enzyme E2Nb; Belongs to the ubiquitin-conjugating enzyme family. (154 aa)
atripUncharacterized protein. (789 aa)
lig3DNA ligase. (1012 aa)
rad51dRAD51 paralog D. (333 aa)
pcnaProliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (260 aa)
exo1Exonuclease 1. (737 aa)
rpa3Replication protein A3. (122 aa)
palb2PALB2_WD40 domain-containing protein. (1356 aa)
rbbp8Uncharacterized protein. (673 aa)
chek1Checkpoint kinase 1; Belongs to the protein kinase superfamily. (460 aa)
slx4SLX4 structure-specific endonuclease subunit homolog (S. cerevisiae). (1628 aa)
LOC102314666Ubiquitin-like domain-containing protein. (131 aa)
mdc1Uncharacterized protein. (2081 aa)
eme2ERCC4 domain-containing protein. (276 aa)
rpa1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (602 aa)
xrcc1X-ray repair complementing defective repair in Chinese hamster cells 1. (627 aa)
dna2DNA replication helicase/nuclease 2. (1401 aa)
rad1RAD1 homolog (S. pombe). (309 aa)
mre11Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing. (695 aa)
sirt7Sirtuin 7. (405 aa)
recql4RecQ helicase-like 4. (1577 aa)
ccna2Cyclin A2; Belongs to the cyclin family. (434 aa)
eme1Essential meiotic structure-specific endonuclease 1. (526 aa)
cdca7lCell division cycle associated 7b. (402 aa)
LOC102297614RAD51 paralog C. (359 aa)
ENSHBUP00000033958TIMELESS-interacting protein; Plays an important role in the control of DNA replication and the maintenance of replication fork stability. Belongs to the CSM3 family. (229 aa)
rad17RAD17 checkpoint clamp loader component. (692 aa)
Your Current Organism:
Haplochromis burtoni
NCBI taxonomy Id: 8153
Other names: Astatotilapia burtoni, Chromis burtoni, H. burtoni
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