STRINGSTRING
ccnt2 ccnt2 leo1 leo1 LOC102312798 LOC102312798 ENSHBUP00000007553 ENSHBUP00000007553 polr2j polr2j gtf2f1 gtf2f1 gtf2h5 gtf2h5 gtf2b gtf2b LOC102289231 LOC102289231 wdr61 wdr61 LOC102303516 LOC102303516 taf5l taf5l polr2h polr2h tceanc2 tceanc2 nelfb nelfb elob elob taf3 taf3 ell ell tbpl2 tbpl2 nelfcd nelfcd polr2i polr2i LOC102311348 LOC102311348 ENSHBUP00000001568 ENSHBUP00000001568 LOC102303915 LOC102303915 gtf2h4 gtf2h4 ercc2 ercc2 ccnh ccnh ccnq ccnq LOC102304830 LOC102304830 ssrp1 ssrp1 POLR2E POLR2E eaf2 eaf2 polr2g polr2g nelfa nelfa LOC102299316 LOC102299316 TAF4 TAF4 cdk7 cdk7 TAF4B TAF4B gtf2a1 gtf2a1 tbpl1 tbpl1 rtf1 rtf1 polr2l polr2l gtf2e2 gtf2e2 ccnk ccnk taf7l taf7l LOC102298451 LOC102298451 supt5h supt5h polr2d polr2d POLR2B POLR2B ENSHBUP00000015737 ENSHBUP00000015737 ctr9 ctr9 paf1 paf1 ENSHBUP00000016295 ENSHBUP00000016295 ENSHBUP00000016698 ENSHBUP00000016698 polr2a polr2a gtf2h1 gtf2h1 ENSHBUP00000018586 ENSHBUP00000018586 NCBP1 NCBP1 taf13 taf13 LOC102302272 LOC102302272 aff4 aff4 polr2f polr2f LOC102296285 LOC102296285 gtf2a2 gtf2a2 mnat1 mnat1 nelfe nelfe polr2k polr2k ercc3 ercc3 gtf2f2 gtf2f2 ncbp2 ncbp2 mllt1 mllt1 LOC102306152 LOC102306152 LOC102297138 LOC102297138 gtf2h3 gtf2h3 taf11 taf11 ccnt1 ccnt1 ENSHBUP00000026794 ENSHBUP00000026794 taf2 taf2 tcea1 tcea1 ENSHBUP00000028113 ENSHBUP00000028113 cinp cinp TCEANC TCEANC LOC102301927 LOC102301927 cdk9 cdk9 cdc73 cdc73 eaf1 eaf1 slc39a13 slc39a13 LOC102307883 LOC102307883 eloa eloa tbp tbp ENSHBUP00000032420 ENSHBUP00000032420 gtf2e1 gtf2e1 ENSHBUP00000033354 ENSHBUP00000033354 supt6h supt6h LOC102292669 LOC102292669 supt4h1 supt4h1 polr2c polr2c supt16h supt16h taf6 taf6
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ccnt2Cyclin T2. (731 aa)
leo1LEO1 homolog, Paf1/RNA polymerase II complex component. (633 aa)
LOC102312798C2 domain-containing protein. (528 aa)
ENSHBUP00000007553Elongin B. (103 aa)
polr2jPolymerase (RNA) II (DNA directed) polypeptide J. (117 aa)
gtf2f1Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (552 aa)
gtf2h5General transcription factor IIH, polypeptide 5. (71 aa)
gtf2bGeneral transcription factor IIB. (318 aa)
LOC102289231Si:dkey-219c3.2. (944 aa)
wdr61WD repeat domain 61. (305 aa)
LOC102303516Uncharacterized protein. (279 aa)
taf5lTAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor. (600 aa)
polr2hDNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (150 aa)
tceanc2Uncharacterized protein. (260 aa)
nelfbNegative elongation factor complex member B. (583 aa)
elobUbiquitin-like domain-containing protein. (119 aa)
taf3TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated facto. (935 aa)
ellElongation factor RNA polymerase II. (676 aa)
tbpl2TATA box binding protein like 2. (320 aa)
nelfcdNegative elongation factor complex member C/D. (579 aa)
polr2iPolymerase (RNA) II (DNA directed) polypeptide I. (135 aa)
LOC102311348Transcription initiation factor TFIID subunit. (1830 aa)
ENSHBUP00000001568Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family. (116 aa)
LOC102303915General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity. (252 aa)
gtf2h4General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (461 aa)
ercc2Excision repair cross-complementation group 2. (760 aa)
ccnhCyclin H; Belongs to the cyclin family. (335 aa)
ccnqCyclin Q; Belongs to the cyclin family. (254 aa)
LOC102304830Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family. (186 aa)
ssrp1FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...] (704 aa)
POLR2ERNA polymerase II subunit E. (138 aa)
eaf2ELL associated factor 2. (260 aa)
polr2gPolymerase (RNA) II (DNA directed) polypeptide G-like. (181 aa)
nelfaNegative elongation factor complex member A. (547 aa)
LOC102299316TAF4A RNA polymerase II, TATA box binding protein (TBP)-associated factor. (854 aa)
TAF4TATA-box binding protein associated factor 4. (992 aa)
cdk7Cyclin-dependent kinase 7; Belongs to the protein kinase superfamily. (343 aa)
TAF4BTATA-box binding protein associated factor 4b. (683 aa)
gtf2a1General transcription factor IIA, 1. (385 aa)
tbpl1TBP-like 1. (187 aa)
rtf1RTF1 homolog, Paf1/RNA polymerase II complex component. (677 aa)
polr2lPolymerase (RNA) II (DNA directed) polypeptide L. (67 aa)
gtf2e2Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (305 aa)
ccnkCyclin K; Belongs to the cyclin family. (539 aa)
taf7lTAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (362 aa)
LOC102298451Si:dkey-12j5.1. (461 aa)
supt5hTranscription elongation factor SPT5. (1082 aa)
polr2dRPOL4c domain-containing protein. (509 aa)
POLR2BDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1088 aa)
ENSHBUP00000015737TFIIS N-terminal domain-containing protein. (661 aa)
ctr9CTR9 homolog, Paf1/RNA polymerase II complex component. (1158 aa)
paf1PAF1 homolog, Paf1/RNA polymerase II complex component. (533 aa)
ENSHBUP00000016295TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (163 aa)
ENSHBUP00000016698FCP1_C domain-containing protein. (180 aa)
polr2aDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1906 aa)
gtf2h1General transcription factor IIH, polypeptide 1. (550 aa)
ENSHBUP00000018586TFIIS N-terminal domain-containing protein. (406 aa)
NCBP1Nuclear cap binding protein subunit 1. (795 aa)
taf13TATA-box binding protein associated factor 13. (124 aa)
LOC102302272TAFH domain-containing protein. (1094 aa)
aff4AF4/FMR2 family, member 4. (1146 aa)
polr2fPolymerase (RNA) II (DNA directed) polypeptide F. (127 aa)
LOC102296285Transcription elongation factor A (SII), 2. (331 aa)
gtf2a2General transcription factor IIA, 2. (196 aa)
mnat1CDK-activating kinase assembly factor MAT1; Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex. (311 aa)
nelfeNegative elongation factor complex member E. (393 aa)
polr2kPolymerase (RNA) II (DNA directed) polypeptide K. (58 aa)
ercc3Excision repair cross-complementation group 3. (783 aa)
gtf2f2General transcription factor IIF, polypeptide 2a. (248 aa)
ncbp2Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (191 aa)
mllt1MLLT1 super elongation complex subunit a. (552 aa)
LOC102306152Uncharacterized protein. (1129 aa)
LOC102297138Elongin A, like. (630 aa)
gtf2h3General transcription factor IIH, polypeptide 3. (305 aa)
taf11TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (204 aa)
ccnt1Cyclin T1; Belongs to the cyclin family. (702 aa)
ENSHBUP00000026794Uncharacterized protein. (57 aa)
taf2TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (1213 aa)
tcea1Transcription elongation factor A (SII), 1. (311 aa)
ENSHBUP00000028113Uncharacterized protein. (86 aa)
cinpCyclin-dependent kinase 2 interacting protein. (210 aa)
TCEANCTranscription elongation factor A N-terminal and central domain containing. (345 aa)
LOC102301927TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (247 aa)
cdk9Cyclin-dependent kinase 9 (CDC2-related kinase); Belongs to the protein kinase superfamily. (393 aa)
cdc73Cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae). (512 aa)
eaf1ELL associated factor 1. (319 aa)
slc39a13Solute carrier family 39 member 13. (457 aa)
LOC102307883Cyclin T2b; Belongs to the cyclin family. (565 aa)
eloaElongin A. (559 aa)
tbpTATA box binding protein. (307 aa)
ENSHBUP00000032420FCP1 homology domain-containing protein. (278 aa)
gtf2e1General transcription factor IIE, polypeptide 1, alpha. (439 aa)
ENSHBUP00000033354WD_REPEATS_REGION domain-containing protein. (78 aa)
supt6hTranscription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family. (1582 aa)
LOC102292669General transcription factor IIH subunit. (392 aa)
supt4h1SPT4 homolog, DSIF elongation factor subunit. (94 aa)
polr2cPolymerase (RNA) II (DNA directed) polypeptide C. (275 aa)
supt16hSPT16 homolog, facilitates chromatin remodeling subunit. (1030 aa)
taf6TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (638 aa)
Your Current Organism:
Haplochromis burtoni
NCBI taxonomy Id: 8153
Other names: Astatotilapia burtoni, Chromis burtoni, H. burtoni
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