27 items (Haplochromis burtoni) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	marchf8	Membrane-associated ring finger (C3HC4) 8. (287 aa)
	LOC102314666	Ubiquitin-like domain-containing protein. (131 aa)
	marchf1	Membrane-associated ring finger (C3HC4) 1. (572 aa)
	LOC102312386	RING-CH-type domain-containing protein. (867 aa)
	man1b1	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family. (467 aa)
	marchf2	Membrane-associated ring finger (C3HC4) 2. (253 aa)
	kxd1	KxDL motif containing 1. (184 aa)
	rnf103	Ring finger protein 103. (697 aa)
	marchf4	Membrane-associated ring finger (C3HC4) 4. (400 aa)
	edem1	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family. (636 aa)
	uba52	Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
	LOC102308862	Membrane-associated ring finger (C3HC4) 9. (360 aa)
	LOC102309557	RING-CH-type domain-containing protein. (552 aa)
	uggt1	UDP-glucose glycoprotein glucosyltransferase 1. (1560 aa)
	marchf7	Membrane-associated ring finger (C3HC4) 7. (797 aa)
	LOC102313201	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family. (857 aa)
	LOC102306282	RING-CH-type domain-containing protein. (256 aa)
	uggt2	UDP-glucose glycoprotein glucosyltransferase 2. (1522 aa)
	ubb	Ubiquitin-like domain-containing protein. (54 aa)
	marchf6	Membrane-associated ring finger (C3HC4) 6. (915 aa)
	ENSHBUP00000018381	Ring finger protein 139. (498 aa)
	LOC102308977	RING-CH-type domain-containing protein. (248 aa)
	edem2	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family. (561 aa)
	marchf11	Membrane-associated ring finger (C3HC4) 11. (349 aa)
	edem3	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family. (888 aa)
	MARCHF9	Membrane associated ring-CH-type finger 9. (338 aa)
	rps27a	Ribosomal protein S27a. (156 aa)

Your Current Organism:

Haplochromis burtoni

NCBI taxonomy Id: 8153
Other names: Astatotilapia burtoni, Chromis burtoni, H. burtoni

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSHBUP00000018381	LOC102312386	ENSHBUP00000018381	ENSHBUP00000028153	Ring finger protein 139.	RING-CH-type domain-containing protein.	0.585
ENSHBUP00000018381	LOC102314666	ENSHBUP00000018381	ENSHBUP00000031002	Ring finger protein 139.	Ubiquitin-like domain-containing protein.	0.559
ENSHBUP00000018381	marchf6	ENSHBUP00000018381	ENSHBUP00000019165	Ring finger protein 139.	Membrane-associated ring finger (C3HC4) 6.	0.585
ENSHBUP00000018381	rps27a	ENSHBUP00000018381	ENSHBUP00000002167	Ring finger protein 139.	Ribosomal protein S27a.	0.793
ENSHBUP00000018381	uba52	ENSHBUP00000018381	ENSHBUP00000026409	Ring finger protein 139.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.713
ENSHBUP00000018381	ubb	ENSHBUP00000018381	ENSHBUP00000019517	Ring finger protein 139.	Ubiquitin-like domain-containing protein.	0.713
LOC102312386	ENSHBUP00000018381	ENSHBUP00000028153	ENSHBUP00000018381	RING-CH-type domain-containing protein.	Ring finger protein 139.	0.585
LOC102312386	LOC102314666	ENSHBUP00000028153	ENSHBUP00000031002	RING-CH-type domain-containing protein.	Ubiquitin-like domain-containing protein.	0.527
LOC102312386	marchf6	ENSHBUP00000028153	ENSHBUP00000019165	RING-CH-type domain-containing protein.	Membrane-associated ring finger (C3HC4) 6.	0.851
LOC102313201	edem1	ENSHBUP00000021581	ENSHBUP00000000979	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	0.906
LOC102313201	edem2	ENSHBUP00000021581	ENSHBUP00000012609	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	0.902
LOC102313201	edem3	ENSHBUP00000021581	ENSHBUP00000003698	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	0.845
LOC102314666	ENSHBUP00000018381	ENSHBUP00000031002	ENSHBUP00000018381	Ubiquitin-like domain-containing protein.	Ring finger protein 139.	0.559
LOC102314666	LOC102312386	ENSHBUP00000031002	ENSHBUP00000028153	Ubiquitin-like domain-containing protein.	RING-CH-type domain-containing protein.	0.527
LOC102314666	kxd1	ENSHBUP00000031002	ENSHBUP00000026699	Ubiquitin-like domain-containing protein.	KxDL motif containing 1.	0.865
LOC102314666	marchf6	ENSHBUP00000031002	ENSHBUP00000019165	Ubiquitin-like domain-containing protein.	Membrane-associated ring finger (C3HC4) 6.	0.527
LOC102314666	rnf103	ENSHBUP00000031002	ENSHBUP00000002025	Ubiquitin-like domain-containing protein.	Ring finger protein 103.	0.539
LOC102314666	rps27a	ENSHBUP00000031002	ENSHBUP00000002167	Ubiquitin-like domain-containing protein.	Ribosomal protein S27a.	0.998
LOC102314666	uba52	ENSHBUP00000031002	ENSHBUP00000026409	Ubiquitin-like domain-containing protein.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.992
LOC102314666	ubb	ENSHBUP00000031002	ENSHBUP00000019517	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.992