5 items (Haplochromis burtoni) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	napa	N-ethylmaleimide-sensitive factor attachment protein, alpha b. (332 aa)
	LOC102306363	N-ethylmaleimide-sensitive factor attachment protein, beta b. (217 aa)
	LOC102305970	Zgc:101679. (317 aa)
	LOC102292754	Uncharacterized protein. (295 aa)
	napg	N-ethylmaleimide-sensitive factor attachment protein, gamma b. (312 aa)

Your Current Organism:

Haplochromis burtoni

NCBI taxonomy Id: 8153
Other names: Astatotilapia burtoni, Chromis burtoni, H. burtoni

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC102292754	napg	ENSHBUP00000015434	ENSHBUP00000007058	Uncharacterized protein.	N-ethylmaleimide-sensitive factor attachment protein, gamma b.	0.918
LOC102306363	napg	ENSHBUP00000031061	ENSHBUP00000007058	N-ethylmaleimide-sensitive factor attachment protein, beta b.	N-ethylmaleimide-sensitive factor attachment protein, gamma b.	0.918
napa	napg	ENSHBUP00000027027	ENSHBUP00000007058	N-ethylmaleimide-sensitive factor attachment protein, alpha b.	N-ethylmaleimide-sensitive factor attachment protein, gamma b.	0.918
napg	LOC102292754	ENSHBUP00000007058	ENSHBUP00000015434	N-ethylmaleimide-sensitive factor attachment protein, gamma b.	Uncharacterized protein.	0.918
napg	LOC102306363	ENSHBUP00000007058	ENSHBUP00000031061	N-ethylmaleimide-sensitive factor attachment protein, gamma b.	N-ethylmaleimide-sensitive factor attachment protein, beta b.	0.918
napg	napa	ENSHBUP00000007058	ENSHBUP00000027027	N-ethylmaleimide-sensitive factor attachment protein, gamma b.	N-ethylmaleimide-sensitive factor attachment protein, alpha b.	0.918