STRINGSTRING
LOC102302702 LOC102302702 LOC102310719 LOC102310719 alyref alyref ppp1cc ppp1cc GSPT1 GSPT1 LOC102311743 LOC102311743 LOC102290684 LOC102290684 PPP1CB PPP1CB LOC102294388 LOC102294388 ENSHBUP00000001629 ENSHBUP00000001629 acin1 acin1 boll boll smg7 smg7 LOC102299886 LOC102299886 ddx39a ddx39a cstf1 cstf1 zc3h3 zc3h3 papolg papolg dclre1a dclre1a LOC102308227 LOC102308227 ppp4r4 ppp4r4 cpsf6 cpsf6 LOC102298035 LOC102298035 ppp2cb ppp2cb nedd1 nedd1 fnbp4 fnbp4 ncmap ncmap serac1 serac1 ppp2r5d ppp2r5d pih1d3 pih1d3 smg5 smg5 rbm8a rbm8a UPF1 UPF1 etf1 etf1 mkrn2 mkrn2 LOC102304439 LOC102304439 PPP2R2C PPP2R2C LOC102297645 LOC102297645 LOC102298153 LOC102298153 LOC102300628 LOC102300628 gle1 gle1 LOC102302606 LOC102302606 LOC102306661 LOC102306661 LOC102292559 LOC102292559 msi1 msi1 pym1 pym1 ENSHBUP00000011182 ENSHBUP00000011182 nxf1 nxf1 tmem240 tmem240 casc3 casc3 cpsf4 cpsf4 CPSF7 CPSF7 LOC102294917 LOC102294917 CPSF3 CPSF3 LOC102299761 LOC102299761 dazap1 dazap1 ppp2r3a ppp2r3a eif4a3 eif4a3 nudt21 nudt21 LOC102292225 LOC102292225 twf1 twf1 cstf2 cstf2 pnn pnn ppp2r3c ppp2r3c ENSHBUP00000014723 ENSHBUP00000014723 cstf3 cstf3 LOC102289508 LOC102289508 rnps1 rnps1 upf3b upf3b st13 st13 ppp2r2d ppp2r2d JAZF1 JAZF1 ppp2r5a ppp2r5a dusp11 dusp11 tmem258 tmem258 cpsf1 cpsf1 ppp1r42 ppp1r42 cops5 cops5 ythdc1 ythdc1 fus fus LOC102288999 LOC102288999 ENSHBUP00000017457 ENSHBUP00000017457 pabpn1 pabpn1 LOC102309626 LOC102309626 pabpc4 pabpc4 LOC102295362 LOC102295362 DDX39A DDX39A pabpc1 pabpc1 tardbp tardbp NCBP1 NCBP1 ppp2ca ppp2ca MSI1 MSI1 LOC102293583 LOC102293583 cirbp cirbp LOC102310296 LOC102310296 LOC102296345 LOC102296345 tut1 tut1 PPP2R5C PPP2R5C zc3h4 zc3h4 LOC102309107 LOC102309107 PABPN1L PABPN1L LOC102289472 LOC102289472 fndc10 fndc10 TWF2 TWF2 wdr82 wdr82 LOC102301667 LOC102301667 nxt2 nxt2 ppp4r1 ppp4r1 ncbp2 ncbp2 LOC102289559 LOC102289559 UPF2 UPF2 msl1 msl1 LOC102301011 LOC102301011 pelo pelo smg1 smg1 LOC102306158 LOC102306158 LOC102313919 LOC102313919 ints11 ints11 LOC106633087 LOC106633087 ppp1cb ppp1cb WDR33 WDR33 clp1 clp1 kiaa0232 kiaa0232 PPP2R3B PPP2R3B upf3a upf3a ints9 ints9 rnmt rnmt hbs1l hbs1l WDR77 WDR77 czib czib taf15 taf15 rbbp6 rbbp6 rnf141 rnf141 ppp2r5b ppp2r5b eif2a eif2a mkrn1 mkrn1 LOC102301386 LOC102301386 LOC102289756 LOC102289756 cfap20 cfap20 LOC102308132 LOC102308132 ENSHBUP00000033442 ENSHBUP00000033442 srrm1 srrm1 msi2 msi2 smg6 smg6 sap18 sap18 poldip3 poldip3 ppp2r5e ppp2r5e dclre1b dclre1b LOC102289549 LOC102289549 LOC102295829 LOC102295829 LOC102299164 LOC102299164 cpsf2 cpsf2 sympk sympk ssu72 ssu72 rngtt rngtt
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Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC102302702DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 19 (DBP5 homolog, yeast). (487 aa)
LOC102310719Uncharacterized protein. (974 aa)
alyrefRRM domain-containing protein. (265 aa)
ppp1ccSerine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. (323 aa)
GSPT1G1 to S phase transition 1. (587 aa)
LOC102311743Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (634 aa)
LOC102290684Serine/threonine-protein phosphatase. (309 aa)
PPP1CBSerine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. (327 aa)
LOC102294388RNA binding protein S1, serine-rich domain. (278 aa)
ENSHBUP00000001629Transmembrane protein 223. (243 aa)
acin1SAP domain-containing protein. (1683 aa)
bollRRM domain-containing protein. (343 aa)
smg7SMG7 nonsense mediated mRNA decay factor. (1187 aa)
LOC102299886RNA binding motif protein 14a. (565 aa)
ddx39aUncharacterized protein. (427 aa)
cstf1Cleavage stimulation factor, 3' pre-RNA, subunit 1. (431 aa)
zc3h3Zinc finger CCCH-type containing 3. (899 aa)
papolgPoly(A) polymerase gamma. (849 aa)
dclre1aDNA cross-link repair 1A (PSO2 homolog, S. cerevisiae). (931 aa)
LOC102308227Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family. (445 aa)
ppp4r4Protein phosphatase 4, regulatory subunit 4. (935 aa)
cpsf6Cleavage and polyadenylation specific factor 6. (586 aa)
LOC102298035Poly(A) binding protein, cytoplasmic 1-like. (655 aa)
ppp2cbSerine/threonine-protein phosphatase. (309 aa)
nedd1NEDD1 gamma-tubulin ring complex targeting factor. (658 aa)
fnbp4Formin binding protein 4. (895 aa)
ncmapUncharacterized protein. (117 aa)
serac1Serine active site containing 1. (645 aa)
ppp2r5dSerine/threonine protein phosphatase 2A regulatory subunit; Belongs to the phosphatase 2A regulatory subunit. (569 aa)
pih1d3PIH1 domain containing 3. (195 aa)
smg5SMG5 nonsense mediated mRNA decay factor. (1125 aa)
rbm8aRNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (160 aa)
UPF1UPF1 RNA helicase and ATPase. (1004 aa)
etf1Eukaryotic translation termination factor 1b. (443 aa)
mkrn2Makorin, ring finger protein, 2. (408 aa)
LOC102304439Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. (332 aa)
PPP2R2CSerine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family. (452 aa)
LOC102297645Zinc finger CCCH-type containing 6. (1159 aa)
LOC102298153Cleavage and polyadenylation specific factor 3. (686 aa)
LOC102300628Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. (328 aa)
gle1GLE1 RNA export mediator. (717 aa)
LOC102302606Mago homolog, exon junction complex subunit. (147 aa)
LOC102306661Si:ch73-252i11.1. (800 aa)
LOC102292559Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family. (448 aa)
msi1Uncharacterized protein. (348 aa)
pym1PYM homolog 1, exon junction complex associated factor. (211 aa)
ENSHBUP00000011182Uncharacterized protein. (73 aa)
nxf1Zgc:153681. (639 aa)
tmem240Transmembrane protein 240a. (175 aa)
casc3Casc3 exon junction complex subunit. (762 aa)
cpsf4Cleavage and polyadenylation specific factor 4. (265 aa)
CPSF7Cleavage and polyadenylation specific factor 7. (482 aa)
LOC102294917FIP1 like 1b (S. cerevisiae). (555 aa)
CPSF3Cleavage and polyadenylation specific factor 3. (402 aa)
LOC102299761Uncharacterized protein. (903 aa)
dazap1DAZ associated protein 1. (451 aa)
ppp2r3aProtein phosphatase 2, regulatory subunit B'', alpha. (1404 aa)
eif4a3Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family. (406 aa)
nudt21Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...] (221 aa)
LOC102292225Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (402 aa)
twf1Twinfilin actin-binding protein 1a. (350 aa)
cstf2Cleavage stimulation factor, 3' pre-RNA, subunit 2. (532 aa)
pnnPinin, desmosome associated protein. (652 aa)
ppp2r3cProtein phosphatase 2, regulatory subunit B'', gamma. (462 aa)
ENSHBUP00000014723Ring finger protein 141. (169 aa)
cstf3Cleavage stimulation factor, 3' pre-RNA, subunit 3. (716 aa)
LOC102289508JAZF zinc finger 1. (243 aa)
rnps1RRM domain-containing protein. (278 aa)
upf3bUPF3B regulator of nonsense mediated mRNA decay. (485 aa)
st13ST13 Hsp70 interacting protein. (371 aa)
ppp2r2dSerine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family. (447 aa)
JAZF1JAZF zinc finger 1b. (243 aa)
ppp2r5aSerine/threonine protein phosphatase 2A regulatory subunit; Belongs to the phosphatase 2A regulatory subunit. (511 aa)
dusp11TYR_PHOSPHATASE_2 domain-containing protein. (345 aa)
tmem258Transmembrane protein 258. (79 aa)
cpsf1Cleavage and polyadenylation specific factor 1. (1423 aa)
ppp1r42Protein phosphatase 1, regulatory subunit 42. (276 aa)
cops5COP9 signalosome subunit 5. (334 aa)
ythdc1YTH domain containing 1. (683 aa)
fusFUS RNA binding protein. (547 aa)
LOC102288999Si:ch211-244b2.4. (357 aa)
ENSHBUP00000017457CID domain-containing protein. (101 aa)
pabpn1Poly(A) binding protein, nuclear 1. (232 aa)
LOC102309626Uncharacterized protein. (1807 aa)
pabpc4Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (627 aa)
LOC102295362Apoptotic chromatin condensation inducer 1b. (1083 aa)
DDX39ADExD-box helicase 39A. (427 aa)
pabpc1Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (635 aa)
tardbpTAR DNA binding protein, like. (298 aa)
NCBP1Nuclear cap binding protein subunit 1. (795 aa)
ppp2caSerine/threonine-protein phosphatase. (309 aa)
MSI1Musashi RNA binding protein 1. (351 aa)
LOC102293583Uncharacterized protein. (270 aa)
cirbpCold inducible RNA binding protein b. (183 aa)
LOC102310296Serine/threonine protein phosphatase 2A regulatory subunit; Belongs to the phosphatase 2A regulatory subunit. (578 aa)
LOC102296345WD_REPEATS_REGION domain-containing protein. (315 aa)
tut1Terminal uridylyl transferase 1, U6 snRNA-specific. (800 aa)
PPP2R5CSerine/threonine protein phosphatase 2A regulatory subunit; Belongs to the phosphatase 2A regulatory subunit. (532 aa)
zc3h4Zinc finger CCCH-type containing 4. (1271 aa)
LOC102309107TAR DNA binding protein. (402 aa)
PABPN1LPoly(A) binding protein nuclear 1 like, cytoplasmic. (262 aa)
LOC102289472DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B. (225 aa)
fndc10Fibronectin type III domain containing 10. (231 aa)
TWF2Twinfilin actin-binding protein 2a. (352 aa)
wdr82WD repeat domain 82. (313 aa)
LOC102301667DUF4685 domain-containing protein. (1111 aa)
nxt2Nuclear transport factor 2-like export factor 2. (143 aa)
ppp4r1WRNPLPNID domain-containing protein. (977 aa)
ncbp2Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (191 aa)
LOC102289559Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family. (446 aa)
UPF2UPF2 regulator of nonsense mediated mRNA decay. (1300 aa)
msl1MSL complex subunit 1b. (509 aa)
LOC102301011Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. (325 aa)
peloProtein pelota homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non- functional ribosomes and degrade damaged mRNAs. (385 aa)
smg1SMG1 nonsense mediated mRNA decay associated PI3K related kinase; Belongs to the PI3/PI4-kinase family. (3480 aa)
LOC102306158G1 to S phase transition 1, like. (432 aa)
LOC102313919Zgc:193690. (483 aa)
ints11Integrator complex subunit 11. (619 aa)
LOC106633087Uncharacterized protein. (344 aa)
ppp1cbSerine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. (332 aa)
WDR33WD repeat domain 33. (1092 aa)
clp1Polyribonucleotide 5'-hydroxyl-kinase Clp1; Polynucleotide kinase that can phosphorylate the 5'-hydroxyl groups of double-stranded RNA (dsRNA), single-stranded RNA (ssRNA), double stranded DNA (dsDNA) and double-stranded DNA:RNA hybrids. dsRNA is phosphorylated more efficiently than dsDNA, and the RNA component of a DNA:RNA hybrid is phosphorylated more efficiently than the DNA component. Appears to have roles in both tRNA splicing and mRNA 3'-end formation. Component of the tRNA splicing endonuclease complex. Phosphorylates the 5'-terminus of the tRNA 3'-exon during tRNA splicing; thi [...] (441 aa)
kiaa0232Zgc:158564. (1348 aa)
PPP2R3BProtein phosphatase 2 regulatory subunit B''beta. (580 aa)
upf3aUPF3A regulator of nonsense mediated mRNA decay. (463 aa)
ints9Integrator complex subunit 9. (675 aa)
rnmtmRNA cap guanine-N7 methyltransferase. (381 aa)
hbs1lHBS1-like translational GTPase. (700 aa)
WDR77WD repeat domain 77. (337 aa)
czibCXXC motif containing zinc binding protein. (160 aa)
taf15TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (480 aa)
rbbp6Uncharacterized protein. (1680 aa)
rnf141Ring finger protein 141. (228 aa)
ppp2r5bSerine/threonine protein phosphatase 2A regulatory subunit; Belongs to the phosphatase 2A regulatory subunit. (522 aa)
eif2aEukaryotic translation initiation factor 2A; Functions in the early steps of protein synthesis of a small number of specific mRNAs. Acts by directing the binding of methionyl- tRNAi to 40S ribosomal subunits. In contrast to the eIF-2 complex, it binds methionyl-tRNAi to 40S subunits in a codon-dependent manner, whereas the eIF-2 complex binds methionyl-tRNAi to 40S subunits in a GTP-dependent manner. (590 aa)
mkrn1Makorin, ring finger protein, 1. (389 aa)
LOC102301386Protein phosphatase 2, regulatory subunit A, beta b. (589 aa)
LOC102289756Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family. (453 aa)
cfap20Cilia and flagella associated protein 20. (205 aa)
LOC102308132Aly/REF export factor. (273 aa)
ENSHBUP00000033442PWI domain-containing protein. (79 aa)
srrm1Serine/arginine repetitive matrix 1. (784 aa)
msi2Musashi RNA-binding protein 2a. (407 aa)
smg6SMG6 nonsense mediated mRNA decay factor. (1641 aa)
sap18Sin3A-associated protein. (183 aa)
poldip3Polymerase (DNA-directed), delta interacting protein 3. (581 aa)
ppp2r5eSerine/threonine protein phosphatase 2A regulatory subunit; Belongs to the phosphatase 2A regulatory subunit. (478 aa)
dclre1bDNA cross-link repair 1B. (586 aa)
LOC102289549Makorin, ring finger protein, 4. (367 aa)
LOC102295829Twinfilin actin-binding protein 2b. (349 aa)
LOC102299164Zgc:162324. (728 aa)
cpsf2Cleavage and polyadenylation specificity factor subunit 2. (787 aa)
sympkSymplekin. (1221 aa)
ssu72SSU72 homolog, RNA polymerase II CTD phosphatase. (194 aa)
rngttPolynucleotide 5'-triphosphatase; Bifunctional mRNA-capping enzyme exhibiting RNA 5'- triphosphatase activity in the N-terminal part and mRNA guanylyltransferase activity in the C-terminal part. Catalyzes the first two steps of cap formation: by removing the gamma-phosphate from the 5'-triphosphate end of nascent mRNA to yield a diphosphate end, and by transferring the gmp moiety of GTP to the 5'-diphosphate terminus. (601 aa)
Your Current Organism:
Haplochromis burtoni
NCBI taxonomy Id: 8153
Other names: Astatotilapia burtoni, Chromis burtoni, H. burtoni
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