16 items (Astatotilapia calliptera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC113009794	Uncharacterized protein. (229 aa)
	RAB15	Uncharacterized protein. (211 aa)
	LOC113029983	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane. (619 aa)
	ENSACLP00000003376	Uncharacterized protein. (445 aa)
	LOC113023477	Uncharacterized protein. (202 aa)
	rab34	RAB34, member RAS oncogene family a. (267 aa)
	rabggtb	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX. (333 aa)
	LOC113008660	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family. (447 aa)
	LOC113017907	ZRAB1B, member RAS oncogene family a. (201 aa)
	LOC113036848	Uncharacterized protein. (212 aa)
	rabggta	Rab geranylgeranyltransferase subunit alpha. (583 aa)
	LOC113012979	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family. (447 aa)
	ptar1	Protein prenyltransferase alpha subunit repeat containing 1. (468 aa)
	LOC113022446	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family. (443 aa)
	LOC113026857	Uncharacterized protein. (206 aa)
	rab15	RAB15, member RAS oncogene family. (213 aa)

Your Current Organism:

Astatotilapia calliptera

NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSACLP00000003376	LOC113008660	ENSACLP00000003376	ENSACLP00000019409	Uncharacterized protein.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.616
ENSACLP00000003376	LOC113009794	ENSACLP00000003376	ENSACLP00000001219	Uncharacterized protein.	Uncharacterized protein.	0.734
ENSACLP00000003376	LOC113012979	ENSACLP00000003376	ENSACLP00000025406	Uncharacterized protein.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.616
ENSACLP00000003376	LOC113017907	ENSACLP00000003376	ENSACLP00000020123	Uncharacterized protein.	ZRAB1B, member RAS oncogene family a.	0.737
ENSACLP00000003376	LOC113022446	ENSACLP00000003376	ENSACLP00000031257	Uncharacterized protein.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.616
ENSACLP00000003376	LOC113023477	ENSACLP00000003376	ENSACLP00000004967	Uncharacterized protein.	Uncharacterized protein.	0.737
ENSACLP00000003376	LOC113026857	ENSACLP00000003376	ENSACLP00000036058	Uncharacterized protein.	Uncharacterized protein.	0.669
ENSACLP00000003376	LOC113036848	ENSACLP00000003376	ENSACLP00000020231	Uncharacterized protein.	Uncharacterized protein.	0.731
ENSACLP00000003376	RAB15	ENSACLP00000003376	ENSACLP00000002373	Uncharacterized protein.	Uncharacterized protein.	0.669
ENSACLP00000003376	ptar1	ENSACLP00000003376	ENSACLP00000025856	Uncharacterized protein.	Protein prenyltransferase alpha subunit repeat containing 1.	0.949
ENSACLP00000003376	rab15	ENSACLP00000003376	ENSACLP00000039027	Uncharacterized protein.	RAB15, member RAS oncogene family.	0.669
ENSACLP00000003376	rab34	ENSACLP00000003376	ENSACLP00000007537	Uncharacterized protein.	RAB34, member RAS oncogene family a.	0.636
ENSACLP00000003376	rabggta	ENSACLP00000003376	ENSACLP00000021705	Uncharacterized protein.	Rab geranylgeranyltransferase subunit alpha.	0.978
ENSACLP00000003376	rabggtb	ENSACLP00000003376	ENSACLP00000009282	Uncharacterized protein.	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	0.961
LOC113008660	ENSACLP00000003376	ENSACLP00000019409	ENSACLP00000003376	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	Uncharacterized protein.	0.616
LOC113008660	LOC113009794	ENSACLP00000019409	ENSACLP00000001219	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	Uncharacterized protein.	0.799
LOC113008660	LOC113017907	ENSACLP00000019409	ENSACLP00000020123	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	ZRAB1B, member RAS oncogene family a.	0.904
LOC113008660	LOC113023477	ENSACLP00000019409	ENSACLP00000004967	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	Uncharacterized protein.	0.904
LOC113008660	LOC113026857	ENSACLP00000019409	ENSACLP00000036058	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	Uncharacterized protein.	0.822
LOC113008660	LOC113029983	ENSACLP00000019409	ENSACLP00000002929	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.	0.616