STRINGSTRING
ENSACLP00000000023 ENSACLP00000000023 SNIP1 SNIP1 snrpc snrpc LOC113031059 LOC113031059 LOC113031059-2 LOC113031059-2 eftud2 eftud2 lsm11 lsm11 ENSACLP00000002234 ENSACLP00000002234 LSM3 LSM3 snrpd2 snrpd2 ik ik ENSACLP00000002722 ENSACLP00000002722 ENSACLP00000002723 ENSACLP00000002723 dhx29 dhx29 tfip11 tfip11 sf3a2 sf3a2 snrpb2 snrpb2 snrnp27 snrnp27 DDX5 DDX5 ENSACLP00000004689 ENSACLP00000004689 UBL5 UBL5 ppil2 ppil2 sde2 sde2 LSM10 LSM10 txnl4a txnl4a prpf4b prpf4b SRRM3 SRRM3 ccdc12 ccdc12 nsrp1 nsrp1 daw1 daw1 snrpg snrpg ENSACLP00000009908 ENSACLP00000009908 dqx1 dqx1 ENSACLP00000010392 ENSACLP00000010392 ENSACLP00000010721 ENSACLP00000010721 LOC113037195 LOC113037195 TCERG1 TCERG1 ENSACLP00000011298 ENSACLP00000011298 LOC113016222 LOC113016222 sf3b6 sf3b6 mfap1 mfap1 ddx21 ddx21 LOC113021021 LOC113021021 rbm22 rbm22 ENSACLP00000013365 ENSACLP00000013365 cwc25 cwc25 prpf19 prpf19 yju2 yju2 LOC113012501 LOC113012501 ENSACLP00000015184 ENSACLP00000015184 crnkl1 crnkl1 dhx16 dhx16 ENSACLP00000016354 ENSACLP00000016354 lsm8 lsm8 snrnp200 snrnp200 lsm1 lsm1 LOC113019378 LOC113019378 ENSACLP00000018002 ENSACLP00000018002 cwc15 cwc15 sf3a1 sf3a1 lsm5 lsm5 aqr aqr sf3b4 sf3b4 lrmda lrmda ENSACLP00000021238 ENSACLP00000021238 ctnnbl1 ctnnbl1 snrpb snrpb ENSACLP00000021666 ENSACLP00000021666 sf3b2 sf3b2 bcas2 bcas2 ddx46 ddx46 NCBP1 NCBP1 SMU1 SMU1 ENSACLP00000023170 ENSACLP00000023170 zmat5 zmat5 ENSACLP00000023721 ENSACLP00000023721 WDR25 WDR25 ENSACLP00000023959 ENSACLP00000023959 snrpa snrpa c14h19orf54 c14h19orf54 wdr53 wdr53 parpbp parpbp cdc40 cdc40 ENSACLP00000025572 ENSACLP00000025572 wbp11 wbp11 sf3a3 sf3a3 LOC113021223 LOC113021223 ppil1 ppil1 ppil4 ppil4 LOC113020192 LOC113020192 LOC113024232 LOC113024232 prpf4 prpf4 phf5a phf5a snrnp40 snrnp40 ENSACLP00000028525 ENSACLP00000028525 DHX15 DHX15 ppie ppie ZNF830 ZNF830 ENSACLP00000029196 ENSACLP00000029196 syf2 syf2 ENSACLP00000029759 ENSACLP00000029759 xab2 xab2 bud13 bud13 ENSACLP00000031005 ENSACLP00000031005 prpf8 prpf8 lsm7 lsm7 prpf31 prpf31 snrpd3 snrpd3 prpf38a prpf38a dhx34 dhx34 ENSACLP00000033005 ENSACLP00000033005 sf3b5 sf3b5 ENSACLP00000033349 ENSACLP00000033349 ppih ppih lsm4 lsm4 ENSACLP00000033665 ENSACLP00000033665 sf3b1 sf3b1 LOC113015606 LOC113015606 rbm41 rbm41 dhx40 dhx40 txnl4b txnl4b usp39 usp39 cd2bp2 cd2bp2 lsm2 lsm2 ENSACLP00000036553 ENSACLP00000036553 snw1 snw1 ENSACLP00000036599 ENSACLP00000036599 rnf113a rnf113a ENSACLP00000037635 ENSACLP00000037635 lsm6 lsm6 dhx33 dhx33 ENSACLP00000037958 ENSACLP00000037958 ppwd1 ppwd1 spaca6 spaca6 sart3 sart3 prpf6 prpf6 dhx35 dhx35 prpf18 prpf18 ENSACLP00000039320 ENSACLP00000039320 ncbp2 ncbp2 ENSACLP00000040227 ENSACLP00000040227 ENSACLP00000040250 ENSACLP00000040250 plrg1 plrg1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ENSACLP00000000023Small nuclear ribonucleoprotein polypeptide A. (247 aa)
SNIP1Smad nuclear interacting protein 1. (376 aa)
snrpcU1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] (149 aa)
LOC113031059Zinc finger, matrin-type 2. (201 aa)
LOC113031059-2Zinc finger matrin-type protein 2. (201 aa)
eftud2Elongation factor Tu GTP binding domain containing 2. (971 aa)
lsm11LSM11, U7 small nuclear RNA associated. (334 aa)
ENSACLP00000002234NFKB activating protein. (388 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (103 aa)
snrpd2Small nuclear ribonucleoprotein Sm D2. (118 aa)
ikIK cytokine. (555 aa)
ENSACLP00000002722Family with sequence similarity 32 member A. (114 aa)
ENSACLP00000002723DEAH (Asp-Glu-Ala-His) box polypeptide 38. (1214 aa)
dhx29ATP-dependent RNA helicase DHX29; ATP-binding RNA helicase involved in translation initiation. Part of the 43S pre-initiation complex that is required for efficient initiation on mRNAs of higher eukaryotes with structured 5'-UTRs by promoting efficient NTPase-dependent 48S complex formation. Specifically binds to the 40S ribosome near the mRNA entrance. Does not possess a processive helicase activity; Belongs to the DEAD box helicase family. DEAH subfamily. (1366 aa)
tfip11Tuftelin-interacting protein 11; Involved in pre-mRNA splicing, specifically in spliceosome disassembly during late-stage splicing events. Belongs to the TFP11/STIP family. (830 aa)
sf3a2Splicing factor 3a, subunit 2. (294 aa)
snrpb2Small nuclear ribonucleoprotein polypeptide B2. (218 aa)
snrnp27Small nuclear ribonucleoprotein 27 (U4/U6.U5). (191 aa)
DDX5DEAD-box helicase 5; Belongs to the DEAD box helicase family. (633 aa)
ENSACLP00000004689Cactin. (731 aa)
UBL5Ubiquitin like 5. (73 aa)
ppil2Peptidylprolyl isomerase (cyclophilin)-like 2. (525 aa)
sde2SDE2 telomere maintenance homolog (S. pombe). (394 aa)
LSM10LSM10, U7 small nuclear RNA associated. (123 aa)
txnl4aThioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
prpf4bPre-mRNA processing factor 4Bb. (1019 aa)
SRRM3Serine/arginine repetitive matrix 3. (639 aa)
ccdc12Coiled-coil domain containing 12. (163 aa)
nsrp1Nuclear speckle splicing regulatory protein 1. (474 aa)
daw1Dynein assembly factor with WDR repeat domains 1. (415 aa)
snrpgSmall nuclear ribonucleoprotein G. (76 aa)
ENSACLP00000009908Activating signal cointegrator 1 complex subunit 3. (1939 aa)
dqx1DEAQ box RNA-dependent ATPase 1. (817 aa)
ENSACLP00000010392Uncharacterized protein. (149 aa)
ENSACLP00000010721SLU7 homolog, splicing factor. (578 aa)
LOC113037195Uncharacterized protein. (193 aa)
TCERG1Transcription elongation regulator 1. (1029 aa)
ENSACLP00000011298Uncharacterized protein. (166 aa)
LOC113016222Uncharacterized protein. (201 aa)
sf3b6Splicing factor 3b, subunit 6. (125 aa)
mfap1Microfibril associated protein 1. (441 aa)
ddx21DEAD (Asp-Glu-Ala-Asp) box helicase 21. (797 aa)
LOC113021021Aly/REF export factor. (273 aa)
rbm22RNA binding motif protein 22. (427 aa)
ENSACLP00000013365Helicase for meiosis 1. (1047 aa)
cwc25CWC25 spliceosome associated protein homolog. (402 aa)
prpf19Pre-mRNA processing factor 19. (505 aa)
yju2YJU2 splicing factor homolog. (340 aa)
LOC113012501Src homology 2 domain containing transforming protein D, a. (406 aa)
ENSACLP00000015184BUD31 homolog. (134 aa)
crnkl1Crooked neck pre-mRNA splicing factor 1. (760 aa)
dhx16DEAH (Asp-Glu-Ala-His) box polypeptide 16. (1055 aa)
ENSACLP00000016354Small nuclear ribonucleoprotein 70 (U1). (473 aa)
lsm8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
snrnp200Small nuclear ribonucleoprotein 200 (U5). (2136 aa)
lsm1U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. (133 aa)
LOC113019378Uncharacterized protein. (177 aa)
ENSACLP00000018002Ig-like domain-containing protein. (161 aa)
cwc15CWC15 spliceosome associated protein homolog. (237 aa)
sf3a1Splicing factor 3a, subunit 1. (784 aa)
lsm5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (88 aa)
aqrAquarius intron-binding spliceosomal factor. (1505 aa)
sf3b4Splicing factor 3b, subunit 4. (401 aa)
lrmdaLeucine rich melanocyte differentiation associated. (236 aa)
ENSACLP00000021238ISY1 splicing factor homolog. (276 aa)
ctnnbl1Catenin, beta like 1. (577 aa)
snrpbSmall nuclear ribonucleoprotein-associated protein. (240 aa)
ENSACLP00000021666RNA-binding region (RNP1, RRM) containing 3. (498 aa)
sf3b2Splicing factor 3b, subunit 2. (859 aa)
bcas2BCAS2 pre-mRNA processing factor. (225 aa)
ddx46DEAD (Asp-Glu-Ala-Asp) box polypeptide 46. (1100 aa)
NCBP1Nuclear cap binding protein subunit 1. (795 aa)
SMU1SMU1 DNA replication regulator and spliceosomal factor. (540 aa)
ENSACLP00000023170U1-type domain-containing protein. (125 aa)
zmat5Uncharacterized protein. (190 aa)
ENSACLP00000023721Small nuclear ribonucleoprotein polypeptide F. (85 aa)
WDR25WD repeat domain 25. (503 aa)
ENSACLP00000023959Matrin-type domain-containing protein. (152 aa)
snrpaSmall nuclear ribonucleoprotein polypeptide A. (280 aa)
c14h19orf54Zgc:153119. (301 aa)
wdr53WD repeat domain 53. (383 aa)
parpbpPARP1 binding protein. (587 aa)
cdc40Cell division cycle 40 homolog (S. cerevisiae). (581 aa)
ENSACLP00000025572Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (112 aa)
wbp11Uncharacterized protein. (731 aa)
sf3a3Splicing factor 3a, subunit 3. (501 aa)
LOC113021223DEAD (Asp-Glu-Ala-Asp) box helicase 5; Belongs to the DEAD box helicase family. (625 aa)
ppil1Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (166 aa)
ppil4Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. (470 aa)
LOC113020192Serine/arginine repetitive matrix 2. (1368 aa)
LOC113024232SMU1 DNA replication regulator and spliceosomal factor b. (510 aa)
prpf4PRP4 pre-mRNA processing factor 4 homolog (yeast). (510 aa)
phf5aPHD finger protein 5A. (149 aa)
snrnp40Small nuclear ribonucleoprotein 40 (U5). (347 aa)
ENSACLP00000028525Si:dkey-93h22.8. (1224 aa)
DHX15DEAH-box helicase 15. (786 aa)
ppiePeptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily. (302 aa)
ZNF830Zinc finger protein 830. (352 aa)
ENSACLP00000029196PWI domain-containing protein. (238 aa)
syf2SYF2 pre-mRNA-splicing factor. (238 aa)
ENSACLP00000029759PRP3 pre-mRNA processing factor 3 homolog (yeast). (731 aa)
xab2XPA binding protein 2. (849 aa)
bud13BUD13 homolog. (557 aa)
ENSACLP00000031005Uncharacterized protein. (535 aa)
prpf8Pre-mRNA processing factor 8. (2350 aa)
lsm7LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated. (129 aa)
prpf31PRP31 pre-mRNA processing factor 31 homolog (yeast). (507 aa)
snrpd3Small nuclear ribonucleoprotein Sm D3. (127 aa)
prpf38aPre-mRNA processing factor 38A. (309 aa)
dhx34DEAH (Asp-Glu-Ala-His) box polypeptide 34. (1140 aa)
ENSACLP00000033005Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (162 aa)
sf3b5Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (86 aa)
ENSACLP00000033349Splicing factor 3b, subunit 3. (1193 aa)
ppihPeptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (177 aa)
lsm4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (147 aa)
ENSACLP00000033665Uncharacterized protein. (165 aa)
sf3b1Splicing factor 3b, subunit 1. (1328 aa)
LOC113015606Uncharacterized protein. (416 aa)
rbm41RNA binding motif protein 41. (445 aa)
dhx40DEAH (Asp-Glu-Ala-His) box polypeptide 40. (740 aa)
txnl4bThioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (149 aa)
usp39Ubiquitin specific peptidase 39. (500 aa)
cd2bp2CD2 (cytoplasmic tail) binding protein 2. (374 aa)
lsm2Smx5. (104 aa)
ENSACLP00000036553Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (71 aa)
snw1SNW domain containing 1. (536 aa)
ENSACLP00000036599DEAH (Asp-Glu-Ala-His) box polypeptide 8. (1189 aa)
rnf113aRing finger protein 113A. (322 aa)
ENSACLP00000037635CWC22 spliceosome associated protein homolog. (693 aa)
lsm6LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated. (80 aa)
dhx33DEAH (Asp-Glu-Ala-His) box polypeptide 33. (703 aa)
ENSACLP00000037958CWC27 spliceosome associated cyclophilin. (450 aa)
ppwd1Peptidylprolyl isomerase domain and WD repeat containing 1. (626 aa)
spaca6Ig-like domain-containing protein. (331 aa)
sart3Spliceosome associated factor 3, U4/U6 recycling protein. (949 aa)
prpf6PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae). (969 aa)
dhx35DEAH-box helicase 35. (699 aa)
prpf18PRP18 pre-mRNA processing factor 18 homolog (yeast). (341 aa)
ENSACLP00000039320Uncharacterized protein. (73 aa)
ncbp2Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (164 aa)
ENSACLP00000040227Uncharacterized protein. (182 aa)
ENSACLP00000040250CDC5 cell division cycle 5-like (S. pombe). (781 aa)
plrg1Pleiotropic regulator 1. (513 aa)
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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