STRINGSTRING
ENSACLP00000000023 ENSACLP00000000023 sf3a2 sf3a2 sf3b6 sf3b6 sf3a1 sf3a1 sf3b4 sf3b4 sf3b2 sf3b2 ddx46 ddx46 sf3a3 sf3a3 phf5a phf5a sf3b5 sf3b5 ENSACLP00000033349 ENSACLP00000033349 sf3b1 sf3b1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ENSACLP00000000023Small nuclear ribonucleoprotein polypeptide A. (247 aa)
sf3a2Splicing factor 3a, subunit 2. (294 aa)
sf3b6Splicing factor 3b, subunit 6. (125 aa)
sf3a1Splicing factor 3a, subunit 1. (784 aa)
sf3b4Splicing factor 3b, subunit 4. (401 aa)
sf3b2Splicing factor 3b, subunit 2. (859 aa)
ddx46DEAD (Asp-Glu-Ala-Asp) box polypeptide 46. (1100 aa)
sf3a3Splicing factor 3a, subunit 3. (501 aa)
phf5aPHD finger protein 5A. (149 aa)
sf3b5Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (86 aa)
ENSACLP00000033349Splicing factor 3b, subunit 3. (1193 aa)
sf3b1Splicing factor 3b, subunit 1. (1328 aa)
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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