(31 nodes) 90S preribosome network (Astatotilapia calliptera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	imp3	IMP U3 small nucleolar ribonucleoprotein 3. (183 aa)
	LOC113016769	PWP2 small subunit processome component. (935 aa)
	ENSACLP00000030784	Nucleolar complex associated 4 homolog. (530 aa)
	BOP1	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (645 aa)
	bms1	BMS1 ribosome biogenesis factor. (1200 aa)
	nol6	Nucleolar protein 6. (1147 aa)
	hunk	Hormonally up-regulated Neu-associated kinase. (686 aa)
	tbl3	Transducin (beta)-like 3. (927 aa)
	noc2l	NOC2-like nucleolar associated transcriptional repressor. (753 aa)
	mphosph10	U3 small nucleolar ribonucleoprotein protein MPP10; Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing; Belongs to the MPP10 family. (679 aa)
	ENSACLP00000037420	Si:ch211-197l9.5. (705 aa)
	PES1	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (572 aa)
	kri1	KRI1 homolog. (768 aa)
	fam207a	Family with sequence similarity 207 member A. (253 aa)
	ENSACLP00000011936	UTP20 small subunit processome component. (2669 aa)
	wdr36	WD repeat domain 36. (889 aa)
	nop14	NOP14 nucleolar protein homolog (yeast). (866 aa)
	utp6	UTP6 small subunit processome component. (595 aa)
	imp4	IMP U3 small nucleolar ribonucleoprotein 4. (291 aa)
	wdr12	Ribosome biogenesis protein WDR12; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (421 aa)
	ENSACLP00000025841	BP28CT domain-containing protein. (335 aa)
	ENSACLP00000025811	U3snoRNP10 domain-containing protein. (341 aa)
	ENSACLP00000025762	Ribosomal L1 domain containing 1. (358 aa)
	utp4	UTP4 small subunit processome component. (684 aa)
	wdr3	WD repeat domain 3. (941 aa)
	rrp7a	Ribosomal RNA processing 7 homolog A. (282 aa)
	LOC113012908	Premelanosome protein b. (618 aa)
	utp18	WD_REPEATS_REGION domain-containing protein. (529 aa)
	PES1-2	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (582 aa)
	srfbp1	BUD22 domain-containing protein. (536 aa)
	nop9	Uncharacterized protein. (613 aa)

Your Current Organism:

Astatotilapia calliptera

NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BOP1	ENSACLP00000011936	ENSACLP00000008725	ENSACLP00000011936	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	UTP20 small subunit processome component.	0.823
BOP1	ENSACLP00000025762	ENSACLP00000008725	ENSACLP00000025762	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Ribosomal L1 domain containing 1.	0.989
BOP1	ENSACLP00000025811	ENSACLP00000008725	ENSACLP00000025811	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	U3snoRNP10 domain-containing protein.	0.899
BOP1	ENSACLP00000025841	ENSACLP00000008725	ENSACLP00000025841	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	BP28CT domain-containing protein.	0.899
BOP1	ENSACLP00000030784	ENSACLP00000008725	ENSACLP00000030784	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Nucleolar complex associated 4 homolog.	0.880
BOP1	LOC113012908	ENSACLP00000008725	ENSACLP00000024234	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Premelanosome protein b.	0.836
BOP1	LOC113016769	ENSACLP00000008725	ENSACLP00000016831	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	PWP2 small subunit processome component.	0.905
BOP1	PES1	ENSACLP00000008725	ENSACLP00000001173	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.996
BOP1	PES1-2	ENSACLP00000008725	ENSACLP00000020622	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.996
BOP1	bms1	ENSACLP00000008725	ENSACLP00000001972	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	BMS1 ribosome biogenesis factor.	0.888
BOP1	imp3	ENSACLP00000008725	ENSACLP00000014575	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	IMP U3 small nucleolar ribonucleoprotein 3.	0.657
BOP1	imp4	ENSACLP00000008725	ENSACLP00000009802	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	IMP U3 small nucleolar ribonucleoprotein 4.	0.868
BOP1	kri1	ENSACLP00000008725	ENSACLP00000000161	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	KRI1 homolog.	0.543
BOP1	mphosph10	ENSACLP00000008725	ENSACLP00000037593	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	U3 small nucleolar ribonucleoprotein protein MPP10; Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing; Belongs to the MPP10 family.	0.787
BOP1	noc2l	ENSACLP00000008725	ENSACLP00000038736	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	NOC2-like nucleolar associated transcriptional repressor.	0.992
BOP1	nol6	ENSACLP00000008725	ENSACLP00000009029	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Nucleolar protein 6.	0.867
BOP1	nop14	ENSACLP00000008725	ENSACLP00000010259	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	NOP14 nucleolar protein homolog (yeast).	0.878
BOP1	nop9	ENSACLP00000008725	ENSACLP00000031247	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Uncharacterized protein.	0.873
BOP1	rrp7a	ENSACLP00000008725	ENSACLP00000024650	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Ribosomal RNA processing 7 homolog A.	0.581
BOP1	srfbp1	ENSACLP00000008725	ENSACLP00000020449	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	BUD22 domain-containing protein.	0.418