(21 nodes) Transcription preinitiation complex assembly network (Astatotilapia calliptera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSACLP00000021146	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (641 aa)
	taf7l	TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (362 aa)
	taf3	TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated facto. (940 aa)
	taf13	TATA-box binding protein associated factor 13. (201 aa)
	gtf2b	General transcription factor IIB. (318 aa)
	LOC113012693	BRF1 RNA polymerase III transcription initiation factor subunit. (695 aa)
	LOC113019369	Uncharacterized protein. (481 aa)
	rrn3	RRN3 homolog, RNA polymerase I transcription factor. (610 aa)
	taf1	Transcription initiation factor TFIID subunit. (1990 aa)
	polr1e	RNA polymerase I subunit E. (420 aa)
	taf1b	TATA box binding protein (Tbp)-associated factor, RNA polymerase I, B. (609 aa)
	ENSACLP00000022669	TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor. (677 aa)
	ENSACLP00000024289	Upstream binding transcription factor, like. (701 aa)
	LOC113037338	BRF1 RNA polymerase III transcription initiation factor subunit b. (697 aa)
	brf2	BRF2 RNA polymerase III transcription initiation factor subunit. (488 aa)
	taf10	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family. (186 aa)
	gtf2a2	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (111 aa)
	ENSACLP00000037852	Upstream binding transcription factor. (672 aa)
	dr1	Down-regulator of transcription 1. (176 aa)
	LOC113025474	Uncharacterized protein. (2573 aa)
	ENSACLP00000041154	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (162 aa)

Your Current Organism:

Astatotilapia calliptera

NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSACLP00000021146	ENSACLP00000022669	ENSACLP00000021146	ENSACLP00000022669	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor.	0.904
ENSACLP00000021146	ENSACLP00000024289	ENSACLP00000021146	ENSACLP00000024289	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	Upstream binding transcription factor, like.	0.564
ENSACLP00000021146	ENSACLP00000037852	ENSACLP00000021146	ENSACLP00000037852	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	Upstream binding transcription factor.	0.564
ENSACLP00000021146	ENSACLP00000041154	ENSACLP00000021146	ENSACLP00000041154	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
ENSACLP00000021146	LOC113019369	ENSACLP00000021146	ENSACLP00000016818	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	Uncharacterized protein.	0.564
ENSACLP00000021146	gtf2a2	ENSACLP00000021146	ENSACLP00000037151	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.	0.926
ENSACLP00000021146	gtf2b	ENSACLP00000021146	ENSACLP00000013544	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	General transcription factor IIB.	0.960
ENSACLP00000021146	taf1	ENSACLP00000021146	ENSACLP00000019004	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	Transcription initiation factor TFIID subunit.	0.999
ENSACLP00000021146	taf10	ENSACLP00000021146	ENSACLP00000033377	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.	0.999
ENSACLP00000021146	taf13	ENSACLP00000021146	ENSACLP00000010915	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TATA-box binding protein associated factor 13.	0.999
ENSACLP00000021146	taf3	ENSACLP00000021146	ENSACLP00000004565	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated facto.	0.987
ENSACLP00000021146	taf7l	ENSACLP00000021146	ENSACLP00000000751	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
ENSACLP00000022669	ENSACLP00000021146	ENSACLP00000022669	ENSACLP00000021146	TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor.	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.904
ENSACLP00000022669	ENSACLP00000024289	ENSACLP00000022669	ENSACLP00000024289	TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor.	Upstream binding transcription factor, like.	0.689
ENSACLP00000022669	ENSACLP00000037852	ENSACLP00000022669	ENSACLP00000037852	TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor.	Upstream binding transcription factor.	0.689
ENSACLP00000022669	ENSACLP00000041154	ENSACLP00000022669	ENSACLP00000041154	TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor.	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.990
ENSACLP00000022669	LOC113019369	ENSACLP00000022669	ENSACLP00000016818	TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor.	Uncharacterized protein.	0.644
ENSACLP00000022669	gtf2a2	ENSACLP00000022669	ENSACLP00000037151	TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor.	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.	0.865
ENSACLP00000022669	gtf2b	ENSACLP00000022669	ENSACLP00000013544	TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor.	General transcription factor IIB.	0.920
ENSACLP00000022669	taf1	ENSACLP00000022669	ENSACLP00000019004	TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor.	Transcription initiation factor TFIID subunit.	0.988