STRINGSTRING
LOC113031059-2 LOC113031059-2 eftud2 eftud2 LSM3 LSM3 prpf38b prpf38b snrpd2 snrpd2 sf3a2 sf3a2 txnl4a txnl4a snrpg snrpg ENSACLP00000010392 ENSACLP00000010392 sf3b6 sf3b6 mfap1 mfap1 dhx16 dhx16 lsm8 lsm8 snrnp200 snrnp200 sf3a1 sf3a1 lsm5 lsm5 sf3b4 sf3b4 snu13 snu13 snrpb snrpb sf3b2 sf3b2 SMU1 SMU1 ENSACLP00000023170 ENSACLP00000023170 ENSACLP00000023721 ENSACLP00000023721 ENSACLP00000023959 ENSACLP00000023959 c14h19orf54 c14h19orf54 ENSACLP00000025572 ENSACLP00000025572 sf3a3 sf3a3 LOC113024232 LOC113024232 prpf4 prpf4 phf5a phf5a ENSACLP00000029759 ENSACLP00000029759 bud13 bud13 ENSACLP00000031005 ENSACLP00000031005 prpf8 prpf8 lsm7 lsm7 prpf31 prpf31 snrpd3 snrpd3 prpf38a prpf38a sf3b5 sf3b5 ENSACLP00000033349 ENSACLP00000033349 lsm4 lsm4 sf3b1 sf3b1 ENSACLP00000037958 ENSACLP00000037958 lsm6 lsm6 LOC113015606 LOC113015606 ENSACLP00000037635 ENSACLP00000037635 rnf113a rnf113a ENSACLP00000036553 ENSACLP00000036553 lsm2 lsm2 LOC113031059 LOC113031059 SNIP1 SNIP1 ENSACLP00000000023 ENSACLP00000000023 ENSACLP00000039320 ENSACLP00000039320 prpf6 prpf6
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC113031059-2Zinc finger matrin-type protein 2. (201 aa)
eftud2Elongation factor Tu GTP binding domain containing 2. (971 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (103 aa)
prpf38bPre-mRNA processing factor 38B. (461 aa)
snrpd2Small nuclear ribonucleoprotein Sm D2. (118 aa)
sf3a2Splicing factor 3a, subunit 2. (294 aa)
txnl4aThioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
snrpgSmall nuclear ribonucleoprotein G. (76 aa)
ENSACLP00000010392Uncharacterized protein. (149 aa)
sf3b6Splicing factor 3b, subunit 6. (125 aa)
mfap1Microfibril associated protein 1. (441 aa)
dhx16DEAH (Asp-Glu-Ala-His) box polypeptide 16. (1055 aa)
lsm8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
snrnp200Small nuclear ribonucleoprotein 200 (U5). (2136 aa)
sf3a1Splicing factor 3a, subunit 1. (784 aa)
lsm5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (88 aa)
sf3b4Splicing factor 3b, subunit 4. (401 aa)
snu13Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
snrpbSmall nuclear ribonucleoprotein-associated protein. (240 aa)
sf3b2Splicing factor 3b, subunit 2. (859 aa)
SMU1SMU1 DNA replication regulator and spliceosomal factor. (540 aa)
ENSACLP00000023170U1-type domain-containing protein. (125 aa)
ENSACLP00000023721Small nuclear ribonucleoprotein polypeptide F. (85 aa)
ENSACLP00000023959Matrin-type domain-containing protein. (152 aa)
c14h19orf54Zgc:153119. (301 aa)
ENSACLP00000025572Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (112 aa)
sf3a3Splicing factor 3a, subunit 3. (501 aa)
LOC113024232SMU1 DNA replication regulator and spliceosomal factor b. (510 aa)
prpf4PRP4 pre-mRNA processing factor 4 homolog (yeast). (510 aa)
phf5aPHD finger protein 5A. (149 aa)
ENSACLP00000029759PRP3 pre-mRNA processing factor 3 homolog (yeast). (731 aa)
bud13BUD13 homolog. (557 aa)
ENSACLP00000031005Uncharacterized protein. (535 aa)
prpf8Pre-mRNA processing factor 8. (2350 aa)
lsm7LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated. (129 aa)
prpf31PRP31 pre-mRNA processing factor 31 homolog (yeast). (507 aa)
snrpd3Small nuclear ribonucleoprotein Sm D3. (127 aa)
prpf38aPre-mRNA processing factor 38A. (309 aa)
sf3b5Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (86 aa)
ENSACLP00000033349Splicing factor 3b, subunit 3. (1193 aa)
lsm4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (147 aa)
sf3b1Splicing factor 3b, subunit 1. (1328 aa)
ENSACLP00000037958CWC27 spliceosome associated cyclophilin. (450 aa)
lsm6LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated. (80 aa)
LOC113015606Uncharacterized protein. (416 aa)
ENSACLP00000037635CWC22 spliceosome associated protein homolog. (693 aa)
rnf113aRing finger protein 113A. (322 aa)
ENSACLP00000036553Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (71 aa)
lsm2Smx5. (104 aa)
LOC113031059Zinc finger, matrin-type 2. (201 aa)
SNIP1Smad nuclear interacting protein 1. (376 aa)
ENSACLP00000000023Small nuclear ribonucleoprotein polypeptide A. (247 aa)
ENSACLP00000039320Uncharacterized protein. (73 aa)
prpf6PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae). (969 aa)
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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