(4 nodes) Cytochrome P450, E-class, group II network (Astatotilapia calliptera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSACLP00000037616	Uncharacterized protein. (299 aa)
	LOC113024448	Cytochrome P450, family 3, subfamily A, polypeptide 65. (497 aa)
	ENSACLP00000041222	Cytochrome P450, family 4, subfamily T, polypeptide 8. (410 aa)
	ENSACLP00000037632	Uncharacterized protein. (304 aa)

Your Current Organism:

Astatotilapia calliptera

NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSACLP00000037616	ENSACLP00000041222	ENSACLP00000037616	ENSACLP00000041222	Uncharacterized protein.	Cytochrome P450, family 4, subfamily T, polypeptide 8.	0.501
ENSACLP00000037632	ENSACLP00000041222	ENSACLP00000037632	ENSACLP00000041222	Uncharacterized protein.	Cytochrome P450, family 4, subfamily T, polypeptide 8.	0.501
ENSACLP00000041222	ENSACLP00000037616	ENSACLP00000041222	ENSACLP00000037616	Cytochrome P450, family 4, subfamily T, polypeptide 8.	Uncharacterized protein.	0.501
ENSACLP00000041222	ENSACLP00000037632	ENSACLP00000041222	ENSACLP00000037632	Cytochrome P450, family 4, subfamily T, polypeptide 8.	Uncharacterized protein.	0.501
ENSACLP00000041222	LOC113024448	ENSACLP00000041222	ENSACLP00000003410	Cytochrome P450, family 4, subfamily T, polypeptide 8.	Cytochrome P450, family 3, subfamily A, polypeptide 65.	0.675
LOC113024448	ENSACLP00000041222	ENSACLP00000003410	ENSACLP00000041222	Cytochrome P450, family 3, subfamily A, polypeptide 65.	Cytochrome P450, family 4, subfamily T, polypeptide 8.	0.675