(46 nodes) PAS domain superfamily network (Astatotilapia calliptera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	kcnh8	Potassium voltage-gated channel, subfamily H (eag-related), member 8. (1054 aa)
	epas1	Endothelial PAS domain protein 1b. (874 aa)
	LOC113026964	Aryl hydrocarbon receptor nuclear translocator-like 2. (642 aa)
	pde8b	Phosphodiesterase. (888 aa)
	LOC113016662	Potassium channel, voltage gated eag related subfamily H, member 7. (1222 aa)
	ncoa2	Nuclear receptor coactivator 2. (1537 aa)
	LOC113035347	Potassium voltage-gated channel, subfamily H (eag-related), member 1a. (963 aa)
	ENSACLP00000036682	Potassium voltage-gated channel, subfamily H (eag-related), member 6a. (1210 aa)
	ENSACLP00000036339	Uncharacterized protein. (720 aa)
	LOC113007405	Potassium voltage-gated channel, subfamily H (eag-related), member 3. (1206 aa)
	LOC113009964	Period circadian clock 2. (1437 aa)
	LOC113006401	Uncharacterized protein. (761 aa)
	LOC113031385	Aryl hydrocarbon receptor nuclear translocator. (775 aa)
	ENSACLP00000029819	Nuclear receptor coactivator 3. (1444 aa)
	hif1a	Hypoxia inducible factor 1 subunit alpha a. (766 aa)
	ENSACLP00000028423	Phosphodiesterase. (799 aa)
	npas4	Neuronal PAS domain protein 4a. (930 aa)
	npas1	Neuronal PAS domain protein 1. (816 aa)
	LOC113036918	Hypoxia inducible factor 1 subunit alpha, like. (676 aa)
	CLOCK	Clock circadian regulator a. (823 aa)
	ENSACLP00000020578	Aryl hydrocarbon receptor 2. (1013 aa)
	LOC113015805	Aryl hydrocarbon receptor 1b. (860 aa)
	LOC113024721	Uncharacterized protein. (954 aa)
	LOC113007126	Uncharacterized protein. (1060 aa)
	ahrr	Uncharacterized protein. (694 aa)
	KCNH7	Potassium voltage-gated channel subfamily H member 7. (1162 aa)
	PER2	Period circadian regulator 2. (1491 aa)
	ENSACLP00000015921	Clock circadian regulator b. (882 aa)
	ENSACLP00000015166	Neuronal PAS domain protein 2. (816 aa)
	kcnh5	Potassium voltage-gated channel, subfamily H (eag-related), member 5b. (1038 aa)
	LOC113028416	Potassium voltage-gated channel subfamily H member 4. (1222 aa)
	NPAS3	Neuronal PAS domain protein 3. (1065 aa)
	LOC113007349	Uncharacterized protein. (970 aa)
	ENSACLP00000011229	Uncharacterized protein. (885 aa)
	per1	Period circadian clock 1b. (1451 aa)
	SIM1	SIM bHLH transcription factor 1a. (748 aa)
	arntl	Aryl hydrocarbon receptor nuclear translocator-like 1a. (638 aa)
	ENSACLP00000009529	Period circadian clock 3. (1278 aa)
	LOC113029374	Uncharacterized protein. (1293 aa)
	ARNTL2	Aryl hydrocarbon receptor nuclear translocator like 2. (617 aa)
	kcnh4	Potassium voltage-gated channel, subfamily H (eag-related), member 4a. (1186 aa)
	LOC113015985	Potassium voltage-gated channel, subfamily H (eag-related), member 3. (1145 aa)
	ENSACLP00000001986	Uncharacterized protein. (357 aa)
	ncoa1	Nuclear receptor coactivator 1. (1481 aa)
	LOC113009960	Uncharacterized protein. (1521 aa)
	ENSACLP00000000122	Aryl-hydrocarbon receptor nuclear translocator 2. (768 aa)

Your Current Organism:

Astatotilapia calliptera

NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARNTL2	CLOCK	ENSACLP00000004699	ENSACLP00000023146	Aryl hydrocarbon receptor nuclear translocator like 2.	Clock circadian regulator a.	0.889
ARNTL2	ENSACLP00000001986	ENSACLP00000004699	ENSACLP00000001986	Aryl hydrocarbon receptor nuclear translocator like 2.	Uncharacterized protein.	0.733
ARNTL2	ENSACLP00000009529	ENSACLP00000004699	ENSACLP00000009529	Aryl hydrocarbon receptor nuclear translocator like 2.	Period circadian clock 3.	0.805
ARNTL2	ENSACLP00000011229	ENSACLP00000004699	ENSACLP00000011229	Aryl hydrocarbon receptor nuclear translocator like 2.	Uncharacterized protein.	0.776
ARNTL2	ENSACLP00000015166	ENSACLP00000004699	ENSACLP00000015166	Aryl hydrocarbon receptor nuclear translocator like 2.	Neuronal PAS domain protein 2.	0.889
ARNTL2	ENSACLP00000015921	ENSACLP00000004699	ENSACLP00000015921	Aryl hydrocarbon receptor nuclear translocator like 2.	Clock circadian regulator b.	0.889
ARNTL2	ENSACLP00000020578	ENSACLP00000004699	ENSACLP00000020578	Aryl hydrocarbon receptor nuclear translocator like 2.	Aryl hydrocarbon receptor 2.	0.776
ARNTL2	ENSACLP00000036339	ENSACLP00000004699	ENSACLP00000036339	Aryl hydrocarbon receptor nuclear translocator like 2.	Uncharacterized protein.	0.534
ARNTL2	LOC113006401	ENSACLP00000004699	ENSACLP00000032028	Aryl hydrocarbon receptor nuclear translocator like 2.	Uncharacterized protein.	0.534
ARNTL2	LOC113007349	ENSACLP00000004699	ENSACLP00000011240	Aryl hydrocarbon receptor nuclear translocator like 2.	Uncharacterized protein.	0.776
ARNTL2	LOC113009964	ENSACLP00000004699	ENSACLP00000034548	Aryl hydrocarbon receptor nuclear translocator like 2.	Period circadian clock 2.	0.805
ARNTL2	LOC113015805	ENSACLP00000004699	ENSACLP00000020493	Aryl hydrocarbon receptor nuclear translocator like 2.	Aryl hydrocarbon receptor 1b.	0.776
ARNTL2	LOC113036918	ENSACLP00000004699	ENSACLP00000025457	Aryl hydrocarbon receptor nuclear translocator like 2.	Hypoxia inducible factor 1 subunit alpha, like.	0.733
ARNTL2	NPAS3	ENSACLP00000004699	ENSACLP00000011722	Aryl hydrocarbon receptor nuclear translocator like 2.	Neuronal PAS domain protein 3.	0.733
ARNTL2	PER2	ENSACLP00000004699	ENSACLP00000018075	Aryl hydrocarbon receptor nuclear translocator like 2.	Period circadian regulator 2.	0.805
ARNTL2	SIM1	ENSACLP00000004699	ENSACLP00000010002	Aryl hydrocarbon receptor nuclear translocator like 2.	SIM bHLH transcription factor 1a.	0.534
ARNTL2	ahrr	ENSACLP00000004699	ENSACLP00000019406	Aryl hydrocarbon receptor nuclear translocator like 2.	Uncharacterized protein.	0.776
ARNTL2	epas1	ENSACLP00000004699	ENSACLP00000041130	Aryl hydrocarbon receptor nuclear translocator like 2.	Endothelial PAS domain protein 1b.	0.733
ARNTL2	hif1a	ENSACLP00000004699	ENSACLP00000029666	Aryl hydrocarbon receptor nuclear translocator like 2.	Hypoxia inducible factor 1 subunit alpha a.	0.733
ARNTL2	npas1	ENSACLP00000004699	ENSACLP00000026029	Aryl hydrocarbon receptor nuclear translocator like 2.	Neuronal PAS domain protein 1.	0.733