17 items (Astatotilapia calliptera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC113021014	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily. (394 aa)
	ENSACLP00000003907	RAB2A, member RAS oncogene family. (189 aa)
	LOC113023477	Uncharacterized protein. (202 aa)
	mapk1	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily. (369 aa)
	ENSACLP00000010513	Uncharacterized protein. (112 aa)
	LOC113034865	Uncharacterized protein. (246 aa)
	GORASP2	GRASP55_65 domain-containing protein. (405 aa)
	golga2	Golgin A2. (1095 aa)
	LOC113017907	ZRAB1B, member RAS oncogene family a. (201 aa)
	LOC113036848	Uncharacterized protein. (212 aa)
	LOC113010033	Golgi reassembly stacking protein 2. (443 aa)
	LOC113010490	Golgi reassembly stacking protein 1a. (459 aa)
	fkbp15	Peptidylprolyl isomerase. (1204 aa)
	blzf1	Basic leucine zipper nuclear factor 1. (425 aa)
	ENSACLP00000036776	Uncharacterized protein. (296 aa)
	ENSACLP00000036799	Uncharacterized protein. (273 aa)
	LOC113029807	GRASP55_65 domain-containing protein. (405 aa)

Your Current Organism:

Astatotilapia calliptera

NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSACLP00000003907	ENSACLP00000010513	ENSACLP00000003907	ENSACLP00000010513	RAB2A, member RAS oncogene family.	Uncharacterized protein.	0.429
ENSACLP00000003907	ENSACLP00000036776	ENSACLP00000003907	ENSACLP00000036776	RAB2A, member RAS oncogene family.	Uncharacterized protein.	0.429
ENSACLP00000003907	ENSACLP00000036799	ENSACLP00000003907	ENSACLP00000036799	RAB2A, member RAS oncogene family.	Uncharacterized protein.	0.429
ENSACLP00000003907	GORASP2	ENSACLP00000003907	ENSACLP00000014762	RAB2A, member RAS oncogene family.	GRASP55_65 domain-containing protein.	0.789
ENSACLP00000003907	LOC113010033	ENSACLP00000003907	ENSACLP00000024001	RAB2A, member RAS oncogene family.	Golgi reassembly stacking protein 2.	0.789
ENSACLP00000003907	LOC113010490	ENSACLP00000003907	ENSACLP00000027397	RAB2A, member RAS oncogene family.	Golgi reassembly stacking protein 1a.	0.789
ENSACLP00000003907	LOC113017907	ENSACLP00000003907	ENSACLP00000020123	RAB2A, member RAS oncogene family.	ZRAB1B, member RAS oncogene family a.	0.648
ENSACLP00000003907	LOC113021014	ENSACLP00000003907	ENSACLP00000011537	RAB2A, member RAS oncogene family.	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	0.708
ENSACLP00000003907	LOC113023477	ENSACLP00000003907	ENSACLP00000004967	RAB2A, member RAS oncogene family.	Uncharacterized protein.	0.648
ENSACLP00000003907	LOC113029807	ENSACLP00000003907	ENSACLP00000040606	RAB2A, member RAS oncogene family.	GRASP55_65 domain-containing protein.	0.789
ENSACLP00000003907	LOC113034865	ENSACLP00000003907	ENSACLP00000011142	RAB2A, member RAS oncogene family.	Uncharacterized protein.	0.648
ENSACLP00000003907	LOC113036848	ENSACLP00000003907	ENSACLP00000020231	RAB2A, member RAS oncogene family.	Uncharacterized protein.	0.652
ENSACLP00000003907	blzf1	ENSACLP00000003907	ENSACLP00000035840	RAB2A, member RAS oncogene family.	Basic leucine zipper nuclear factor 1.	0.885
ENSACLP00000003907	fkbp15	ENSACLP00000003907	ENSACLP00000028521	RAB2A, member RAS oncogene family.	Peptidylprolyl isomerase.	0.429
ENSACLP00000003907	golga2	ENSACLP00000003907	ENSACLP00000016338	RAB2A, member RAS oncogene family.	Golgin A2.	0.554
ENSACLP00000003907	mapk1	ENSACLP00000003907	ENSACLP00000005434	RAB2A, member RAS oncogene family.	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	0.708
ENSACLP00000010513	ENSACLP00000003907	ENSACLP00000010513	ENSACLP00000003907	Uncharacterized protein.	RAB2A, member RAS oncogene family.	0.429
ENSACLP00000010513	GORASP2	ENSACLP00000010513	ENSACLP00000014762	Uncharacterized protein.	GRASP55_65 domain-containing protein.	0.746
ENSACLP00000010513	LOC113010033	ENSACLP00000010513	ENSACLP00000024001	Uncharacterized protein.	Golgi reassembly stacking protein 2.	0.746
ENSACLP00000010513	LOC113010490	ENSACLP00000010513	ENSACLP00000027397	Uncharacterized protein.	Golgi reassembly stacking protein 1a.	0.746