26 items (Astatotilapia calliptera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC113022327	V-ski avian sarcoma viral oncogene homolog b. (686 aa)
	atp1b4	Sodium/potassium-transporting ATPase subunit beta; This is the non-catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of Na(+) and K(+) ions across the plasma membrane. Belongs to the X(+)/potassium ATPases subunit beta family. (343 aa)
	LOC113033248	Mothers against decapentaplegic homolog. (489 aa)
	RPS27A	Ribosomal protein S27a. (212 aa)
	mapk1	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily. (369 aa)
	nedd4l	NEDD4 like E3 ubiquitin protein ligase. (1249 aa)
	ENSACLP00000009605	Ubiquitin B. (723 aa)
	ENSACLP00000010348	Nuclear receptor corepressor 1. (2152 aa)
	LOC113021014	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily. (394 aa)
	ENSACLP00000014162	Homeobox domain-containing protein. (132 aa)
	LOC113030103	Uncharacterized protein. (3518 aa)
	LOC113025730	Mothers against decapentaplegic homolog. (503 aa)
	ski	V-ski avian sarcoma viral oncogene homolog a. (715 aa)
	trim33	Tripartite motif containing 33. (1222 aa)
	smad3	Mothers against decapentaplegic homolog. (425 aa)
	ENSACLP00000022602	Mothers against decapentaplegic homolog. (494 aa)
	ncor2	Nuclear receptor corepressor 2. (2362 aa)
	SMAD3	Mothers against decapentaplegic homolog. (425 aa)
	LOC113014376	Mothers against decapentaplegic homolog. (607 aa)
	LOC113033624	Mothers against decapentaplegic homolog. (510 aa)
	uba52	Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
	snw1	SNW domain containing 1. (536 aa)
	LOC113025941	Mothers against decapentaplegic homolog. (472 aa)
	LOC113008499	Ubiquitin specific peptidase 9; Belongs to the peptidase C19 family. (2612 aa)
	LOC113029118	TGFB-induced factor homeobox 1. (307 aa)
	ENSACLP00000022919	Poly [ADP-ribose] polymerase; Poly-ADP-ribosyltransferase that mediates poly-ADP- ribosylation of proteins and plays a key role in DNA repair. (999 aa)

Your Current Organism:

Astatotilapia calliptera

NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSACLP00000009605	ENSACLP00000010348	ENSACLP00000009605	ENSACLP00000010348	Ubiquitin B.	Nuclear receptor corepressor 1.	0.651
ENSACLP00000009605	ENSACLP00000022602	ENSACLP00000009605	ENSACLP00000022602	Ubiquitin B.	Mothers against decapentaplegic homolog.	0.584
ENSACLP00000009605	ENSACLP00000022919	ENSACLP00000009605	ENSACLP00000022919	Ubiquitin B.	Poly [ADP-ribose] polymerase; Poly-ADP-ribosyltransferase that mediates poly-ADP- ribosylation of proteins and plays a key role in DNA repair.	0.691
ENSACLP00000009605	LOC113008499	ENSACLP00000009605	ENSACLP00000038214	Ubiquitin B.	Ubiquitin specific peptidase 9; Belongs to the peptidase C19 family.	0.746
ENSACLP00000009605	LOC113014376	ENSACLP00000009605	ENSACLP00000025117	Ubiquitin B.	Mothers against decapentaplegic homolog.	0.584
ENSACLP00000009605	LOC113022327	ENSACLP00000009605	ENSACLP00000021800	Ubiquitin B.	V-ski avian sarcoma viral oncogene homolog b.	0.615
ENSACLP00000009605	LOC113025730	ENSACLP00000009605	ENSACLP00000021363	Ubiquitin B.	Mothers against decapentaplegic homolog.	0.584
ENSACLP00000009605	LOC113025941	ENSACLP00000009605	ENSACLP00000037387	Ubiquitin B.	Mothers against decapentaplegic homolog.	0.556
ENSACLP00000009605	LOC113033248	ENSACLP00000009605	ENSACLP00000003049	Ubiquitin B.	Mothers against decapentaplegic homolog.	0.556
ENSACLP00000009605	LOC113033624	ENSACLP00000009605	ENSACLP00000025950	Ubiquitin B.	Mothers against decapentaplegic homolog.	0.584
ENSACLP00000009605	RPS27A	ENSACLP00000009605	ENSACLP00000004031	Ubiquitin B.	Ribosomal protein S27a.	0.986
ENSACLP00000009605	SMAD3	ENSACLP00000009605	ENSACLP00000023954	Ubiquitin B.	Mothers against decapentaplegic homolog.	0.556
ENSACLP00000009605	ncor2	ENSACLP00000009605	ENSACLP00000023436	Ubiquitin B.	Nuclear receptor corepressor 2.	0.651
ENSACLP00000009605	nedd4l	ENSACLP00000009605	ENSACLP00000007477	Ubiquitin B.	NEDD4 like E3 ubiquitin protein ligase.	0.869
ENSACLP00000009605	ski	ENSACLP00000009605	ENSACLP00000001073	Ubiquitin B.	V-ski avian sarcoma viral oncogene homolog a.	0.640
ENSACLP00000009605	smad3	ENSACLP00000009605	ENSACLP00000022096	Ubiquitin B.	Mothers against decapentaplegic homolog.	0.556
ENSACLP00000009605	trim33	ENSACLP00000009605	ENSACLP00000021926	Ubiquitin B.	Tripartite motif containing 33.	0.643
ENSACLP00000009605	uba52	ENSACLP00000009605	ENSACLP00000032826	Ubiquitin B.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.992
ENSACLP00000010348	ENSACLP00000009605	ENSACLP00000010348	ENSACLP00000009605	Nuclear receptor corepressor 1.	Ubiquitin B.	0.651
ENSACLP00000010348	ENSACLP00000022602	ENSACLP00000010348	ENSACLP00000022602	Nuclear receptor corepressor 1.	Mothers against decapentaplegic homolog.	0.611