28 items (Astatotilapia calliptera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	kxd1	KxDL motif containing 1. (184 aa)
	LOC113012864	Mitogen-activated protein kinase. (361 aa)
	RPS27A	Ribosomal protein S27a. (212 aa)
	nod1	Nucleotide-binding oligomerization domain containing 1. (941 aa)
	mapkapk2	MAPK activated protein kinase 2a; Belongs to the protein kinase superfamily. (389 aa)
	LOC113011055	Protein kinase domain-containing protein. (701 aa)
	LOC113013036	Inhibitor of nuclear factor kappa B kinase regulatory subunit gamma. (621 aa)
	ENSACLP00000009605	Ubiquitin B. (723 aa)
	ENSACLP00000010793	Protein kinase domain-containing protein. (107 aa)
	LOC113022696	Mitogen-activated protein kinase. (361 aa)
	ENSACLP00000011698	TGF-beta activated kinase 1/MAP3K7 binding protein 1. (620 aa)
	LOC113009105	Mitogen-activated protein kinase. (361 aa)
	map3k20	Uncharacterized protein. (804 aa)
	LOC113030103	Uncharacterized protein. (3518 aa)
	ripk2	Receptor-interacting serine-threonine kinase 2. (576 aa)
	traf6	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family. (571 aa)
	LOC113013098	Mitogen-activated protein kinase. (364 aa)
	irak1	Interleukin-1 receptor-associated kinase 1. (745 aa)
	tab2	TGF-beta activated kinase 1 (MAP3K7) binding protein 2. (738 aa)
	LOC113022853	MAPK activated protein kinase 3; Belongs to the protein kinase superfamily. (412 aa)
	map3k7	Mitogen-activated protein kinase kinase kinase 7. (578 aa)
	tab3	TGF-beta activated kinase 1 (MAP3K7) binding protein 3. (616 aa)
	LOC113028005	Mitogen-activated protein kinase kinase 6. (359 aa)
	uba52	Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
	LOC113026979	Ubiquitin-conjugating enzyme E2Nb; Belongs to the ubiquitin-conjugating enzyme family. (154 aa)
	MAPKAPK3	MAPK activated protein kinase 3; Belongs to the protein kinase superfamily. (421 aa)
	MAP2K6	Mitogen-activated protein kinase kinase 6. (254 aa)
	LOC113009238	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (153 aa)

Your Current Organism:

Astatotilapia calliptera

NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSACLP00000009605	ENSACLP00000010793	ENSACLP00000009605	ENSACLP00000010793	Ubiquitin B.	Protein kinase domain-containing protein.	0.703
ENSACLP00000009605	ENSACLP00000011698	ENSACLP00000009605	ENSACLP00000011698	Ubiquitin B.	TGF-beta activated kinase 1/MAP3K7 binding protein 1.	0.678
ENSACLP00000009605	LOC113009238	ENSACLP00000009605	ENSACLP00000039826	Ubiquitin B.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.959
ENSACLP00000009605	LOC113011055	ENSACLP00000009605	ENSACLP00000008231	Ubiquitin B.	Protein kinase domain-containing protein.	0.696
ENSACLP00000009605	LOC113013036	ENSACLP00000009605	ENSACLP00000009153	Ubiquitin B.	Inhibitor of nuclear factor kappa B kinase regulatory subunit gamma.	0.691
ENSACLP00000009605	LOC113026979	ENSACLP00000009605	ENSACLP00000040715	Ubiquitin B.	Ubiquitin-conjugating enzyme E2Nb; Belongs to the ubiquitin-conjugating enzyme family.	0.959
ENSACLP00000009605	RPS27A	ENSACLP00000009605	ENSACLP00000004031	Ubiquitin B.	Ribosomal protein S27a.	0.986
ENSACLP00000009605	irak1	ENSACLP00000009605	ENSACLP00000020196	Ubiquitin B.	Interleukin-1 receptor-associated kinase 1.	0.712
ENSACLP00000009605	kxd1	ENSACLP00000009605	ENSACLP00000039856	Ubiquitin B.	KxDL motif containing 1.	0.772
ENSACLP00000009605	map3k20	ENSACLP00000009605	ENSACLP00000014024	Ubiquitin B.	Uncharacterized protein.	0.696
ENSACLP00000009605	map3k7	ENSACLP00000009605	ENSACLP00000029481	Ubiquitin B.	Mitogen-activated protein kinase kinase kinase 7.	0.703
ENSACLP00000009605	nod1	ENSACLP00000009605	ENSACLP00000006280	Ubiquitin B.	Nucleotide-binding oligomerization domain containing 1.	0.600
ENSACLP00000009605	ripk2	ENSACLP00000009605	ENSACLP00000015326	Ubiquitin B.	Receptor-interacting serine-threonine kinase 2.	0.559
ENSACLP00000009605	tab2	ENSACLP00000009605	ENSACLP00000027325	Ubiquitin B.	TGF-beta activated kinase 1 (MAP3K7) binding protein 2.	0.887
ENSACLP00000009605	tab3	ENSACLP00000009605	ENSACLP00000029788	Ubiquitin B.	TGF-beta activated kinase 1 (MAP3K7) binding protein 3.	0.925
ENSACLP00000009605	traf6	ENSACLP00000009605	ENSACLP00000016510	Ubiquitin B.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.962
ENSACLP00000009605	uba52	ENSACLP00000009605	ENSACLP00000032826	Ubiquitin B.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.992
ENSACLP00000010793	ENSACLP00000009605	ENSACLP00000010793	ENSACLP00000009605	Protein kinase domain-containing protein.	Ubiquitin B.	0.703
ENSACLP00000010793	ENSACLP00000011698	ENSACLP00000010793	ENSACLP00000011698	Protein kinase domain-containing protein.	TGF-beta activated kinase 1/MAP3K7 binding protein 1.	0.991
ENSACLP00000010793	LOC113009105	ENSACLP00000010793	ENSACLP00000012131	Protein kinase domain-containing protein.	Mitogen-activated protein kinase.	0.872