(19 nodes) Zinc-binding domain, present in Dystrophin, CREB-binding protein. network (Astatotilapia calliptera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSACLP00000040635	Dystrobrevin. (579 aa)
	ENSACLP00000036881	CREB binding protein a. (2436 aa)
	ENSACLP00000035689	HECT and RLD domain containing E3 ubiquitin protein ligase 2. (4818 aa)
	dtna	Dystrobrevin. (744 aa)
	kcmf1	Potassium channel modulatory factor 1. (389 aa)
	ENSACLP00000000886	Dystrophin related protein 2. (909 aa)
	LOC113011687	Dystrobrevin. (623 aa)
	ENSACLP00000009419	Zinc finger, ZZ-type containing 3. (1142 aa)
	ENSACLP00000009411	Dystrophin. (1187 aa)
	dytn	ZZ-type domain-containing protein. (621 aa)
	mib2	Mindbomb E3 ubiquitin protein ligase 2. (1071 aa)
	sqstm1	Sequestosome 1. (428 aa)
	LOC113027597	E1A binding protein p300 a. (2787 aa)
	LOC113020749	CREB binding protein b. (2474 aa)
	ENSACLP00000023258	Mindbomb E3 ubiquitin protein ligase 1. (1034 aa)
	LOC113021131	E1A binding protein p300 b. (2771 aa)
	tada2b	Transcriptional adapter. (493 aa)
	ENSACLP00000012872	Uncharacterized protein. (490 aa)
	zzef1	Zinc finger, ZZ-type with EF hand domain 1. (3084 aa)

Your Current Organism:

Astatotilapia calliptera

NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSACLP00000000886	ENSACLP00000040635	ENSACLP00000000886	ENSACLP00000040635	Dystrophin related protein 2.	Dystrobrevin.	0.644
ENSACLP00000000886	LOC113011687	ENSACLP00000000886	ENSACLP00000012230	Dystrophin related protein 2.	Dystrobrevin.	0.644
ENSACLP00000000886	dtna	ENSACLP00000000886	ENSACLP00000027933	Dystrophin related protein 2.	Dystrobrevin.	0.644
ENSACLP00000009411	ENSACLP00000040635	ENSACLP00000009411	ENSACLP00000040635	Dystrophin.	Dystrobrevin.	0.644
ENSACLP00000009411	LOC113011687	ENSACLP00000009411	ENSACLP00000012230	Dystrophin.	Dystrobrevin.	0.644
ENSACLP00000009411	dtna	ENSACLP00000009411	ENSACLP00000027933	Dystrophin.	Dystrobrevin.	0.654
ENSACLP00000009419	tada2b	ENSACLP00000009419	ENSACLP00000018382	Zinc finger, ZZ-type containing 3.	Transcriptional adapter.	0.688
ENSACLP00000023258	mib2	ENSACLP00000023258	ENSACLP00000023414	Mindbomb E3 ubiquitin protein ligase 1.	Mindbomb E3 ubiquitin protein ligase 2.	0.688
ENSACLP00000035689	ENSACLP00000036881	ENSACLP00000035689	ENSACLP00000036881	HECT and RLD domain containing E3 ubiquitin protein ligase 2.	CREB binding protein a.	0.504
ENSACLP00000035689	LOC113020749	ENSACLP00000035689	ENSACLP00000041145	HECT and RLD domain containing E3 ubiquitin protein ligase 2.	CREB binding protein b.	0.504
ENSACLP00000035689	LOC113021131	ENSACLP00000035689	ENSACLP00000021110	HECT and RLD domain containing E3 ubiquitin protein ligase 2.	E1A binding protein p300 b.	0.534
ENSACLP00000035689	LOC113027597	ENSACLP00000035689	ENSACLP00000027808	HECT and RLD domain containing E3 ubiquitin protein ligase 2.	E1A binding protein p300 a.	0.534
ENSACLP00000036881	ENSACLP00000035689	ENSACLP00000036881	ENSACLP00000035689	CREB binding protein a.	HECT and RLD domain containing E3 ubiquitin protein ligase 2.	0.504
ENSACLP00000036881	LOC113020749	ENSACLP00000036881	ENSACLP00000041145	CREB binding protein a.	CREB binding protein b.	0.846
ENSACLP00000036881	LOC113021131	ENSACLP00000036881	ENSACLP00000021110	CREB binding protein a.	E1A binding protein p300 b.	0.987
ENSACLP00000036881	LOC113027597	ENSACLP00000036881	ENSACLP00000027808	CREB binding protein a.	E1A binding protein p300 a.	0.987
ENSACLP00000036881	zzef1	ENSACLP00000036881	ENSACLP00000037528	CREB binding protein a.	Zinc finger, ZZ-type with EF hand domain 1.	0.530
ENSACLP00000040635	ENSACLP00000000886	ENSACLP00000040635	ENSACLP00000000886	Dystrobrevin.	Dystrophin related protein 2.	0.644
ENSACLP00000040635	ENSACLP00000009411	ENSACLP00000040635	ENSACLP00000009411	Dystrobrevin.	Dystrophin.	0.644
ENSACLP00000040635	dytn	ENSACLP00000040635	ENSACLP00000005708	Dystrobrevin.	ZZ-type domain-containing protein.	0.644