(12 nodes) Mixed, incl. Apolipoprotein D, and Arylesterase network (Perca flavescens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A484C132	Lipocln_cytosolic_FA-bd_dom domain-containing protein; Belongs to the calycin superfamily. Lipocalin family. (197 aa)
	A0A484C1C7	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family. (341 aa)
	A0A484C6R9	Uncharacterized protein. (110 aa)
	A0A484C7A3	Lipocln_cytosolic_FA-bd_dom domain-containing protein; Belongs to the calycin superfamily. Lipocalin family. (191 aa)
	A0A484C9T8	Uncharacterized protein. (343 aa)
	A0A484CAV6	Clusterin; Belongs to the clusterin family. (464 aa)
	A0A484CKY2	Uncharacterized protein. (362 aa)
	A0A484CU17	Lipocln_cytosolic_FA-bd_dom domain-containing protein; Belongs to the calycin superfamily. Lipocalin family. (186 aa)
	A0A484D0W9	Uncharacterized protein. (375 aa)
	A0A484D967	Uncharacterized protein. (356 aa)
	A0A484DAE3	Uncharacterized protein. (227 aa)
	A0A484DBK7	Uncharacterized protein. (356 aa)

Your Current Organism:

Perca flavescens

NCBI taxonomy Id: 8167
Other names: Morone flavescens, P. flavescens, yellow perch

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A484C9T8	A0A484CKY2	Uncharacterized protein.	Uncharacterized protein.	0.846
A0A484C9T8	A0A484D0W9	Uncharacterized protein.	Uncharacterized protein.	0.787
A0A484CAV6	A0A484D967	Clusterin; Belongs to the clusterin family.	Uncharacterized protein.	0.562
A0A484CAV6	A0A484DAE3	Clusterin; Belongs to the clusterin family.	Uncharacterized protein.	0.571
A0A484CKY2	A0A484C9T8	Uncharacterized protein.	Uncharacterized protein.	0.846
A0A484D0W9	A0A484C9T8	Uncharacterized protein.	Uncharacterized protein.	0.787
A0A484D967	A0A484CAV6	Uncharacterized protein.	Clusterin; Belongs to the clusterin family.	0.562
A0A484D967	A0A484DBK7	Uncharacterized protein.	Uncharacterized protein.	0.864
A0A484DAE3	A0A484CAV6	Uncharacterized protein.	Clusterin; Belongs to the clusterin family.	0.571
A0A484DBK7	A0A484D967	Uncharacterized protein.	Uncharacterized protein.	0.864