38 items (Perca flavescens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A484CNL2	Uncharacterized protein. (577 aa)
	A0A484CS24	WD_REPEATS_REGION domain-containing protein. (1088 aa)
	A0A484CQ56	Uncharacterized protein. (530 aa)
	A0A484CXD6	RRM domain-containing protein. (492 aa)
	A0A484CWA6	Uncharacterized protein. (1139 aa)
	A0A484CWA0	Uncharacterized protein. (136 aa)
	A0A484CN47	CID domain-containing protein. (1086 aa)
	A0A484CMG2	SLBP_RNA_bind domain-containing protein. (346 aa)
	A0A484CKU5	Uncharacterized protein. (266 aa)
	CLP1	Polyribonucleotide 5'-hydroxyl-kinase Clp1; Polynucleotide kinase that can phosphorylate the 5'-hydroxyl groups of double-stranded RNA (dsRNA), single-stranded RNA (ssRNA), double stranded DNA (dsDNA) and double-stranded DNA:RNA hybrids. dsRNA is phosphorylated more efficiently than dsDNA, and the RNA component of a DNA:RNA hybrid is phosphorylated more efficiently than the DNA component. Appears to have roles in both tRNA splicing and mRNA 3'-end formation. Component of the tRNA splicing endonuclease complex. Phosphorylates the 5'-terminus of the tRNA 3'-exon during tRNA splicing; thi [...] (446 aa)
	A0A484CY16	SLBP_RNA_bind domain-containing protein. (269 aa)
	A0A484CYG7	Sm domain-containing protein. (339 aa)
	A0A484D0S6	Uncharacterized protein. (933 aa)
	A0A484D4X8	Uncharacterized protein. (509 aa)
	A0A484D5S3	CID domain-containing protein. (295 aa)
	A0A484D6I8	Uncharacterized protein. (175 aa)
	A0A484D928	CID domain-containing protein. (1220 aa)
	A0A484D944	A4_EXTRA domain-containing protein. (719 aa)
	A0A484DB28	Uncharacterized protein. (487 aa)
	A0A484DFU7	Uncharacterized protein. (194 aa)
	A0A484DG02	WD_REPEATS_REGION domain-containing protein. (441 aa)
	A0A484DJ77	RPOL4c domain-containing protein. (144 aa)
	A0A484DNF4	RRM domain-containing protein. (452 aa)
	A0A484DNV0	Fip1 domain-containing protein. (574 aa)
	A0A484DP22	Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...] (229 aa)
	A0A484DQX3	Suf domain-containing protein. (716 aa)
	A0A484CKQ4	CID domain-containing protein. (1075 aa)
	A0A484CK29	CID domain-containing protein. (1009 aa)
	A0A484CHR2	S1 motif domain-containing protein. (768 aa)
	A0A484CGF9	Uncharacterized protein. (835 aa)
	A0A484CBD7	Lactamase_B domain-containing protein. (392 aa)
	A0A484CB21	Uncharacterized protein. (690 aa)
	A0A484C9W8	Cleavage and polyadenylation specificity factor subunit 2. (787 aa)
	A0A484C7N6	Lactamase_B domain-containing protein. (221 aa)
	A0A484C0T1	Uncharacterized protein. (572 aa)
	A0A484C043	RRM domain-containing protein. (521 aa)
	A0A484CQF4	Poly [ADP-ribose] polymerase. (2662 aa)
	A0A484CRR8	Sm domain-containing protein. (137 aa)

Your Current Organism:

Perca flavescens

NCBI taxonomy Id: 8167
Other names: Morone flavescens, P. flavescens, yellow perch

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A484C043	A0A484C9W8	A0A484C043	A0A484C9W8	RRM domain-containing protein.	Cleavage and polyadenylation specificity factor subunit 2.	0.869
A0A484C043	A0A484CB21	A0A484C043	A0A484CB21	RRM domain-containing protein.	Uncharacterized protein.	0.748
A0A484C043	A0A484CBD7	A0A484C043	A0A484CBD7	RRM domain-containing protein.	Lactamase_B domain-containing protein.	0.748
A0A484C043	A0A484CGF9	A0A484C043	A0A484CGF9	RRM domain-containing protein.	Uncharacterized protein.	0.756
A0A484C043	A0A484CKU5	A0A484C043	A0A484CKU5	RRM domain-containing protein.	Uncharacterized protein.	0.788
A0A484C043	A0A484CN47	A0A484C043	A0A484CN47	RRM domain-containing protein.	CID domain-containing protein.	0.783
A0A484C043	A0A484CNL2	A0A484C043	A0A484CNL2	RRM domain-containing protein.	Uncharacterized protein.	0.855
A0A484C043	A0A484CQF4	A0A484C043	A0A484CQF4	RRM domain-containing protein.	Poly [ADP-ribose] polymerase.	0.820
A0A484C043	A0A484CS24	A0A484C043	A0A484CS24	RRM domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.777
A0A484C043	A0A484CWA0	A0A484C043	A0A484CWA0	RRM domain-containing protein.	Uncharacterized protein.	0.773
A0A484C043	A0A484CWA6	A0A484C043	A0A484CWA6	RRM domain-containing protein.	Uncharacterized protein.	0.773
A0A484C043	A0A484CXD6	A0A484C043	A0A484CXD6	RRM domain-containing protein.	RRM domain-containing protein.	0.924
A0A484C043	A0A484D0S6	A0A484C043	A0A484D0S6	RRM domain-containing protein.	Uncharacterized protein.	0.638
A0A484C043	A0A484DG02	A0A484C043	A0A484DG02	RRM domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.859
A0A484C043	A0A484DNF4	A0A484C043	A0A484DNF4	RRM domain-containing protein.	RRM domain-containing protein.	0.901
A0A484C043	A0A484DNV0	A0A484C043	A0A484DNV0	RRM domain-containing protein.	Fip1 domain-containing protein.	0.763
A0A484C043	A0A484DP22	A0A484C043	A0A484DP22	RRM domain-containing protein.	Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...]	0.984
A0A484C043	A0A484DQX3	A0A484C043	A0A484DQX3	RRM domain-containing protein.	Suf domain-containing protein.	0.790
A0A484C043	CLP1	A0A484C043	A0A484CXF7	RRM domain-containing protein.	Polyribonucleotide 5'-hydroxyl-kinase Clp1; Polynucleotide kinase that can phosphorylate the 5'-hydroxyl groups of double-stranded RNA (dsRNA), single-stranded RNA (ssRNA), double stranded DNA (dsDNA) and double-stranded DNA:RNA hybrids. dsRNA is phosphorylated more efficiently than dsDNA, and the RNA component of a DNA:RNA hybrid is phosphorylated more efficiently than the DNA component. Appears to have roles in both tRNA splicing and mRNA 3'-end formation. Component of the tRNA splicing endonuclease complex. Phosphorylates the 5'-terminus of the tRNA 3'-exon during tRNA splicing; thi [...]	0.850
A0A484C0T1	A0A484C9W8	A0A484C0T1	A0A484C9W8	Uncharacterized protein.	Cleavage and polyadenylation specificity factor subunit 2.	0.405