24 items (Perca flavescens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

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protein homology

Your Input:
	A0A484C043	RRM domain-containing protein. (521 aa)
	A0A484C0D1	RRM domain-containing protein. (232 aa)
	A0A484C9W8	Cleavage and polyadenylation specificity factor subunit 2. (787 aa)
	A0A484CB21	Uncharacterized protein. (690 aa)
	A0A484CBD7	Lactamase_B domain-containing protein. (392 aa)
	A0A484CGF9	Uncharacterized protein. (835 aa)
	A0A484CKU5	Uncharacterized protein. (266 aa)
	A0A484CN47	CID domain-containing protein. (1086 aa)
	A0A484CNL2	Uncharacterized protein. (577 aa)
	A0A484CQF4	Poly [ADP-ribose] polymerase. (2662 aa)
	A0A484CS24	WD_REPEATS_REGION domain-containing protein. (1088 aa)
	A0A484CWA0	Uncharacterized protein. (136 aa)
	A0A484CWA6	Uncharacterized protein. (1139 aa)
	A0A484CWL4	MIF4G domain-containing protein. (797 aa)
	A0A484CXD6	RRM domain-containing protein. (492 aa)
	CLP1	Polyribonucleotide 5'-hydroxyl-kinase Clp1; Polynucleotide kinase that can phosphorylate the 5'-hydroxyl groups of double-stranded RNA (dsRNA), single-stranded RNA (ssRNA), double stranded DNA (dsDNA) and double-stranded DNA:RNA hybrids. dsRNA is phosphorylated more efficiently than dsDNA, and the RNA component of a DNA:RNA hybrid is phosphorylated more efficiently than the DNA component. Appears to have roles in both tRNA splicing and mRNA 3'-end formation. Component of the tRNA splicing endonuclease complex. Phosphorylates the 5'-terminus of the tRNA 3'-exon during tRNA splicing; thi [...] (446 aa)
	A0A484CYT0	Uncharacterized protein. (220 aa)
	A0A484D0Q5	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (164 aa)
	A0A484DG02	WD_REPEATS_REGION domain-containing protein. (441 aa)
	A0A484DNF4	RRM domain-containing protein. (452 aa)
	A0A484DNV0	Fip1 domain-containing protein. (574 aa)
	A0A484DP22	Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...] (229 aa)
	A0A484DQH4	RRM domain-containing protein. (261 aa)
	A0A484DQX3	Suf domain-containing protein. (716 aa)

Your Current Organism:

Perca flavescens

NCBI taxonomy Id: 8167
Other names: Morone flavescens, P. flavescens, yellow perch

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A484C043	A0A484C0D1	A0A484C043	A0A484C0D1	RRM domain-containing protein.	RRM domain-containing protein.	0.717
A0A484C043	A0A484C9W8	A0A484C043	A0A484C9W8	RRM domain-containing protein.	Cleavage and polyadenylation specificity factor subunit 2.	0.869
A0A484C043	A0A484CB21	A0A484C043	A0A484CB21	RRM domain-containing protein.	Uncharacterized protein.	0.748
A0A484C043	A0A484CBD7	A0A484C043	A0A484CBD7	RRM domain-containing protein.	Lactamase_B domain-containing protein.	0.748
A0A484C043	A0A484CGF9	A0A484C043	A0A484CGF9	RRM domain-containing protein.	Uncharacterized protein.	0.756
A0A484C043	A0A484CKU5	A0A484C043	A0A484CKU5	RRM domain-containing protein.	Uncharacterized protein.	0.788
A0A484C043	A0A484CN47	A0A484C043	A0A484CN47	RRM domain-containing protein.	CID domain-containing protein.	0.783
A0A484C043	A0A484CNL2	A0A484C043	A0A484CNL2	RRM domain-containing protein.	Uncharacterized protein.	0.855
A0A484C043	A0A484CQF4	A0A484C043	A0A484CQF4	RRM domain-containing protein.	Poly [ADP-ribose] polymerase.	0.820
A0A484C043	A0A484CS24	A0A484C043	A0A484CS24	RRM domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.777
A0A484C043	A0A484CWA0	A0A484C043	A0A484CWA0	RRM domain-containing protein.	Uncharacterized protein.	0.773
A0A484C043	A0A484CWA6	A0A484C043	A0A484CWA6	RRM domain-containing protein.	Uncharacterized protein.	0.773
A0A484C043	A0A484CWL4	A0A484C043	A0A484CWL4	RRM domain-containing protein.	MIF4G domain-containing protein.	0.769
A0A484C043	A0A484CXD6	A0A484C043	A0A484CXD6	RRM domain-containing protein.	RRM domain-containing protein.	0.924
A0A484C043	A0A484CYT0	A0A484C043	A0A484CYT0	RRM domain-containing protein.	Uncharacterized protein.	0.725
A0A484C043	A0A484D0Q5	A0A484C043	A0A484D0Q5	RRM domain-containing protein.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	0.717
A0A484C043	A0A484DG02	A0A484C043	A0A484DG02	RRM domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.859
A0A484C043	A0A484DNF4	A0A484C043	A0A484DNF4	RRM domain-containing protein.	RRM domain-containing protein.	0.901
A0A484C043	A0A484DNV0	A0A484C043	A0A484DNV0	RRM domain-containing protein.	Fip1 domain-containing protein.	0.763
A0A484C043	A0A484DP22	A0A484C043	A0A484DP22	RRM domain-containing protein.	Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...]	0.984