(7 nodes) SMN complex network (Sparus aurata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	gemin6	Gem nuclear organelle associated protein 6. (169 aa)
	gemin5	Gem nuclear organelle associated protein 5. (1460 aa)
	gemin4	Gem nuclear organelle associated protein 4. (1153 aa)
	ddx20	DEAD-box helicase 20. (805 aa)
	gemin7	Gem nuclear organelle associated protein 7. (137 aa)
	gemin8	Gem nuclear organelle associated protein 8. (210 aa)
	LOC115582378	Survival motor neuron protein 1-like. (283 aa)

Your Current Organism:

Sparus aurata

NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC115582378	ddx20	ENSSAUP00010056670	ENSSAUP00010030871	Survival motor neuron protein 1-like.	DEAD-box helicase 20.	0.994
LOC115582378	gemin4	ENSSAUP00010056670	ENSSAUP00010009929	Survival motor neuron protein 1-like.	Gem nuclear organelle associated protein 4.	0.944
LOC115582378	gemin5	ENSSAUP00010056670	ENSSAUP00010007913	Survival motor neuron protein 1-like.	Gem nuclear organelle associated protein 5.	0.955
LOC115582378	gemin6	ENSSAUP00010056670	ENSSAUP00010000008	Survival motor neuron protein 1-like.	Gem nuclear organelle associated protein 6.	0.892
LOC115582378	gemin7	ENSSAUP00010056670	ENSSAUP00010032405	Survival motor neuron protein 1-like.	Gem nuclear organelle associated protein 7.	0.935
LOC115582378	gemin8	ENSSAUP00010056670	ENSSAUP00010048816	Survival motor neuron protein 1-like.	Gem nuclear organelle associated protein 8.	0.953
ddx20	LOC115582378	ENSSAUP00010030871	ENSSAUP00010056670	DEAD-box helicase 20.	Survival motor neuron protein 1-like.	0.994
ddx20	gemin4	ENSSAUP00010030871	ENSSAUP00010009929	DEAD-box helicase 20.	Gem nuclear organelle associated protein 4.	0.992
ddx20	gemin5	ENSSAUP00010030871	ENSSAUP00010007913	DEAD-box helicase 20.	Gem nuclear organelle associated protein 5.	0.992
ddx20	gemin6	ENSSAUP00010030871	ENSSAUP00010000008	DEAD-box helicase 20.	Gem nuclear organelle associated protein 6.	0.985
ddx20	gemin7	ENSSAUP00010030871	ENSSAUP00010032405	DEAD-box helicase 20.	Gem nuclear organelle associated protein 7.	0.985
ddx20	gemin8	ENSSAUP00010030871	ENSSAUP00010048816	DEAD-box helicase 20.	Gem nuclear organelle associated protein 8.	0.979
gemin4	LOC115582378	ENSSAUP00010009929	ENSSAUP00010056670	Gem nuclear organelle associated protein 4.	Survival motor neuron protein 1-like.	0.944
gemin4	ddx20	ENSSAUP00010009929	ENSSAUP00010030871	Gem nuclear organelle associated protein 4.	DEAD-box helicase 20.	0.992
gemin4	gemin5	ENSSAUP00010009929	ENSSAUP00010007913	Gem nuclear organelle associated protein 4.	Gem nuclear organelle associated protein 5.	0.960
gemin4	gemin6	ENSSAUP00010009929	ENSSAUP00010000008	Gem nuclear organelle associated protein 4.	Gem nuclear organelle associated protein 6.	0.949
gemin4	gemin7	ENSSAUP00010009929	ENSSAUP00010032405	Gem nuclear organelle associated protein 4.	Gem nuclear organelle associated protein 7.	0.951
gemin4	gemin8	ENSSAUP00010009929	ENSSAUP00010048816	Gem nuclear organelle associated protein 4.	Gem nuclear organelle associated protein 8.	0.936
gemin5	LOC115582378	ENSSAUP00010007913	ENSSAUP00010056670	Gem nuclear organelle associated protein 5.	Survival motor neuron protein 1-like.	0.955
gemin5	ddx20	ENSSAUP00010007913	ENSSAUP00010030871	Gem nuclear organelle associated protein 5.	DEAD-box helicase 20.	0.992