STRINGSTRING
ENSSAUP00010000274 ENSSAUP00010000274 ENSSAUP00010001952 ENSSAUP00010001952 LOC115577163 LOC115577163 vps50 vps50 cog3 cog3 LOC115591172 LOC115591172 cog2 cog2 rgp1 rgp1 LOC115594110 LOC115594110 sys1 sys1 vps51 vps51 cog4 cog4 cog6 cog6 cog1 cog1 cog8 cog8 tmf1 tmf1 arfrp1 arfrp1 COG5 COG5 smim7 smim7 eipr1 eipr1 arl13a arl13a ENSSAUP00010037538 ENSSAUP00010037538 VPS54 VPS54 cog7 cog7 vps53 vps53 RIC1 RIC1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ENSSAUP00010000274RAB34, member RAS oncogene family a. (278 aa)
ENSSAUP00010001952VPS52 subunit of GARP complex. (721 aa)
LOC115577163Vacuolar protein sorting-associated protein 52 homolog. (721 aa)
vps50VPS50 subunit of EARP/GARPII complex. (1064 aa)
cog3Component of oligomeric golgi complex 3. (825 aa)
LOC115591172Ras-related protein Rab-6B-like. (324 aa)
cog2Component of oligomeric golgi complex 2. (728 aa)
rgp1RGP1 homolog, RAB6A GEF complex partner 1. (386 aa)
LOC115594110Ras-related protein Rab-34-like. (255 aa)
sys1SYS1 golgi trafficking protein. (156 aa)
vps51VPS51 subunit of GARP complex. (836 aa)
cog4Component of oligomeric golgi complex 4. (773 aa)
cog6Component of oligomeric golgi complex 6. (651 aa)
cog1Component of oligomeric golgi complex 1. (993 aa)
cog8Component of oligomeric golgi complex 8. (614 aa)
tmf1TATA element modulatory factor 1. (1169 aa)
arfrp1ADP ribosylation factor related protein 1. (201 aa)
COG5Component of oligomeric golgi complex 5. (826 aa)
smim7Small integral membrane protein 7. (95 aa)
eipr1EARP complex and GARP complex interacting protein 1. (545 aa)
arl13aADP ribosylation factor like GTPase 13A. (550 aa)
ENSSAUP00010037538VPS54 subunit of GARP complex. (972 aa)
VPS54VPS54 subunit of GARP complex. (962 aa)
cog7Component of oligomeric golgi complex 7. (771 aa)
vps53VPS53 subunit of GARP complex. (831 aa)
RIC1RIC1 homolog, RAB6A GEF complex partner 1. (1446 aa)
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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