STRINGSTRING
dcp1a dcp1a ENSSAUP00010029726 ENSSAUP00010029726 ENSSAUP00010025514 ENSSAUP00010025514 pym1 pym1 UPF1 UPF1 magoh magoh upf3a upf3a smg7 smg7 smg6 smg6 ENSSAUP00010002943 ENSSAUP00010002943 LOC115583072-2 LOC115583072-2 LOC115583072 LOC115583072 LOC115572870 LOC115572870 smg8 smg8 NCBP1 NCBP1 etf1 etf1 ncbp2 ncbp2 UPF2 UPF2 smg9 smg9 ENSSAUP00010043789 ENSSAUP00010043789 upf3b upf3b casc3 casc3 smg5 smg5 nbas nbas pnrc2 pnrc2 LOC115595325 LOC115595325 rbm8a rbm8a ctif ctif
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
dcp1aDecapping mRNA 1A. (501 aa)
ENSSAUP00010029726Decapping mRNA 2. (314 aa)
ENSSAUP00010025514SMG1 nonsense mediated mRNA decay associated PI3K related kinase. (3644 aa)
pym1PYM homolog 1, exon junction complex associated factor. (212 aa)
UPF1UPF1 RNA helicase and ATPase. (1106 aa)
magohMago homolog, exon junction complex subunit. (147 aa)
upf3aUPF3A regulator of nonsense mediated mRNA decay. (463 aa)
smg7SMG7 nonsense mediated mRNA decay factor. (1211 aa)
smg6SMG6 nonsense mediated mRNA decay factor. (1653 aa)
ENSSAUP00010002943annotation not available (2785 aa)
LOC115583072-2Eukaryotic initiation factor 4A-III. (441 aa)
LOC115583072Eukaryotic initiation factor 4A-III. (429 aa)
LOC115572870Regulator of nonsense transcripts 1-like. (1113 aa)
smg8SMG8 nonsense mediated mRNA decay factor. (983 aa)
NCBP1Nuclear cap binding protein subunit 1. (795 aa)
etf1Eukaryotic translation termination factor 1. (443 aa)
ncbp2Nuclear cap binding protein subunit 2. (164 aa)
UPF2UPF2 regulator of nonsense mediated mRNA decay. (1278 aa)
smg9SMG9 nonsense mediated mRNA decay factor. (535 aa)
ENSSAUP00010043789SKI2 homolog, superkiller viralicidic activity 2-like. (1266 aa)
upf3bUPF3B regulator of nonsense mediated mRNA decay. (544 aa)
casc3CASC3 exon junction complex subunit. (786 aa)
smg5SMG5 nonsense mediated mRNA decay factor. (1121 aa)
nbasNBAS subunit of NRZ tethering complex. (2368 aa)
pnrc2Proline rich nuclear receptor coactivator 2. (156 aa)
LOC115595325mRNA-decapping enzyme 1B-like. (698 aa)
rbm8aRNA binding motif protein 8A. (180 aa)
ctifCap binding complex dependent translation initiation factor. (716 aa)
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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