(77 nodes) Retrograde transport, endosome to Golgi network (Sparus aurata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	vps26a	VPS26, retromer complex component A. (330 aa)
	stx16	Syntaxin 16. (302 aa)
	UBE2O	Ubiquitin conjugating enzyme E2 O. (1392 aa)
	stx10	Syntaxin 10. (258 aa)
	SLC66A2	Solute carrier family 66 member 2. (271 aa)
	ENSSAUP00010001952	VPS52 subunit of GARP complex. (721 aa)
	LOC115577163	Vacuolar protein sorting-associated protein 52 homolog. (721 aa)
	LOC115591172	Ras-related protein Rab-6B-like. (324 aa)
	LOC115569937	Transmembrane protein 87A-like. (662 aa)
	snx8	Sorting nexin 8. (516 aa)
	rgp1	RGP1 homolog, RAB6A GEF complex partner 1. (386 aa)
	LOC115591351	Syntaxin-6-like. (279 aa)
	ankfy1	Ankyrin repeat and FYVE domain containing 1. (1167 aa)
	LOC115593536	Vacuolar protein sorting-associated protein 26B-like. (357 aa)
	rhobtb3	Rho related BTB domain containing 3. (619 aa)
	RAB29	Ras-related protein Rab-7L1-like. (205 aa)
	vps51	VPS51 subunit of GARP complex. (836 aa)
	vps35	VPS35 retromer complex component. (798 aa)
	ENSSAUP00010010905	Sorting nexin 1b. (564 aa)
	rnf126	Ring finger protein 126. (320 aa)
	gbf1	Golgi brefeldin A resistant guanine nucleotide exchange factor 1. (1876 aa)
	rab41	RAB41, member RAS oncogene family. (211 aa)
	tbc1d10a	TBC1 domain family member 10A. (516 aa)
	snx2	Sorting nexin 2. (513 aa)
	ENSSAUP00010017923	Si:ch211-193c2.2. (219 aa)
	ENSSAUP00010017960	Si:dkey-246g23.2. (259 aa)
	cln5	CLN5 intracellular trafficking protein. (330 aa)
	heatr5a	HEAT repeat containing 5A. (2064 aa)
	ENSSAUP00010019366	annotation not available (1690 aa)
	LOC115573509	Clathrin heavy chain 1. (1684 aa)
	snx3	Sorting nexin 3. (162 aa)
	GOLT1B	Vesicle transport protein GOT1B. (150 aa)
	clcf1	Cardiotrophin like cytokine factor 1. (480 aa)
	LOC115568589	Trichohyalin-like. (1167 aa)
	arfrp1	ADP ribosylation factor related protein 1. (201 aa)
	LOC115594156	Sorting nexin-12. (160 aa)
	LOC115586424	Vesicle transport protein GOT1B. (138 aa)
	ENSSAUP00010024400	HEAT repeat containing 5B. (2027 aa)
	VAMP3	Vesicle associated membrane protein 3. (102 aa)
	rbsn	Rabenosyn, RAB effector. (779 aa)
	LOC115586381	Sorting nexin-1-like. (811 aa)
	LOC115589258	Dynactin subunit 1-like. (1282 aa)
	washc1	WASH complex subunit 1. (473 aa)
	ENSSAUP00010032918	Trafficking protein particle complex 10. (1309 aa)
	tbc1d23	TBC1 domain family member 23. (697 aa)
	LOC115573112	Ras-related protein Rab-6B-like. (222 aa)
	RAB9A	RAB9A, member RAS oncogene family. (202 aa)
	ENSSAUP00010037538	VPS54 subunit of GARP complex. (972 aa)
	VPS54	VPS54 subunit of GARP complex. (962 aa)
	vps29	VPS29 retromer complex component. (207 aa)
	ENSSAUP00010040265	Dynactin 1b. (1238 aa)
	vps26b	VPS26, retromer complex component B. (333 aa)
	LOC115571916	E3 ubiquitin-protein ligase RNF126-like. (355 aa)
	ENSSAUP00010043112	Pleckstrin homology domain containing, family J member 1. (165 aa)
	LOC115594255	Ras-related protein Rab-6A. (212 aa)
	GCC2	GRIP and coiled-coil domain containing 2. (1650 aa)
	TMEM87A	Transmembrane protein 87A-like. (550 aa)
	LOC115576589	Ras-related protein Rab-9A-like. (236 aa)
	stx5	Syntaxin 5. (329 aa)
	vps53	VPS53 subunit of GARP complex. (831 aa)
	tbc1d5	TBC1 domain family member 5. (878 aa)
	prepl	Prolyl endopeptidase like. (726 aa)
	snx6	Sorting nexin 6. (429 aa)
	LOC115583651	Sorting nexin-6-like. (369 aa)
	LOC115576228	Sesquipedalian-1-like. (319 aa)
	tbc1d10b	TBC1 domain family member 10B. (914 aa)
	RIC1	RIC1 homolog, RAB6A GEF complex partner 1. (1446 aa)
	BET1L	Bet1 golgi vesicular membrane trafficking protein like. (109 aa)
	cltcl1	Clathrin heavy chain like 1. (1718 aa)
	ENSSAUP00010062959	ADP-ribosylation factor-like 1. (158 aa)
	pikfyve	Phosphoinositide kinase, FYVE-type zinc finger containing. (2092 aa)
	snx5	Sorting nexin 5. (406 aa)
	ENSSAUP00010064112	annotation not available (270 aa)
	LOC115593018	TBC1 domain family member 10A-like. (473 aa)
	TMEM87B	Transmembrane protein 87B. (572 aa)
	vti1a	Vesicle transport through interaction with t-SNAREs 1A. (224 aa)
	vti1b	Vesicle transport through interaction with t-SNAREs 1B. (227 aa)

Your Current Organism:

Sparus aurata

NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BET1L	ENSSAUP00010062959	ENSSAUP00010061524	ENSSAUP00010062959	Bet1 golgi vesicular membrane trafficking protein like.	ADP-ribosylation factor-like 1.	0.442
BET1L	LOC115591351	ENSSAUP00010061524	ENSSAUP00010006847	Bet1 golgi vesicular membrane trafficking protein like.	Syntaxin-6-like.	0.548
BET1L	VAMP3	ENSSAUP00010061524	ENSSAUP00010026642	Bet1 golgi vesicular membrane trafficking protein like.	Vesicle associated membrane protein 3.	0.637
BET1L	ankfy1	ENSSAUP00010061524	ENSSAUP00010007061	Bet1 golgi vesicular membrane trafficking protein like.	Ankyrin repeat and FYVE domain containing 1.	0.445
BET1L	gbf1	ENSSAUP00010061524	ENSSAUP00010013101	Bet1 golgi vesicular membrane trafficking protein like.	Golgi brefeldin A resistant guanine nucleotide exchange factor 1.	0.687
BET1L	rhobtb3	ENSSAUP00010061524	ENSSAUP00010007760	Bet1 golgi vesicular membrane trafficking protein like.	Rho related BTB domain containing 3.	0.427
BET1L	stx10	ENSSAUP00010061524	ENSSAUP00010001613	Bet1 golgi vesicular membrane trafficking protein like.	Syntaxin 10.	0.548
BET1L	stx16	ENSSAUP00010061524	ENSSAUP00010063099	Bet1 golgi vesicular membrane trafficking protein like.	Syntaxin 16.	0.493
BET1L	stx5	ENSSAUP00010061524	ENSSAUP00010050988	Bet1 golgi vesicular membrane trafficking protein like.	Syntaxin 5.	0.996
BET1L	vti1a	ENSSAUP00010061524	ENSSAUP00010063550	Bet1 golgi vesicular membrane trafficking protein like.	Vesicle transport through interaction with t-SNAREs 1A.	0.635
BET1L	vti1b	ENSSAUP00010061524	ENSSAUP00010063425	Bet1 golgi vesicular membrane trafficking protein like.	Vesicle transport through interaction with t-SNAREs 1B.	0.635
ENSSAUP00010001952	ENSSAUP00010037538	ENSSAUP00010001952	ENSSAUP00010037538	VPS52 subunit of GARP complex.	VPS54 subunit of GARP complex.	0.966
ENSSAUP00010001952	ENSSAUP00010062959	ENSSAUP00010001952	ENSSAUP00010062959	VPS52 subunit of GARP complex.	ADP-ribosylation factor-like 1.	0.714
ENSSAUP00010001952	GCC2	ENSSAUP00010001952	ENSSAUP00010046376	VPS52 subunit of GARP complex.	GRIP and coiled-coil domain containing 2.	0.678
ENSSAUP00010001952	LOC115573112	ENSSAUP00010001952	ENSSAUP00010036462	VPS52 subunit of GARP complex.	Ras-related protein Rab-6B-like.	0.806
ENSSAUP00010001952	LOC115576589	ENSSAUP00010001952	ENSSAUP00010048809	VPS52 subunit of GARP complex.	Ras-related protein Rab-9A-like.	0.595
ENSSAUP00010001952	LOC115591172	ENSSAUP00010001952	ENSSAUP00010003962	VPS52 subunit of GARP complex.	Ras-related protein Rab-6B-like.	0.806
ENSSAUP00010001952	LOC115591351	ENSSAUP00010001952	ENSSAUP00010006847	VPS52 subunit of GARP complex.	Syntaxin-6-like.	0.817
ENSSAUP00010001952	LOC115594255	ENSSAUP00010001952	ENSSAUP00010046011	VPS52 subunit of GARP complex.	Ras-related protein Rab-6A.	0.806
ENSSAUP00010001952	RAB9A	ENSSAUP00010001952	ENSSAUP00010036815	VPS52 subunit of GARP complex.	RAB9A, member RAS oncogene family.	0.595