(117 nodes) RNA transport network (Sparus aurata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	alkbh5	alkB homolog 5, RNA demethylase. (357 aa)
	LOC115594748	Nucleophosmin-like. (299 aa)
	nup35	Nucleoporin 35. (291 aa)
	nup133	Nucleoporin 133. (1148 aa)
	ENSSAUP00010003342	annotation not available (317 aa)
	LOC115594658	Uncharacterized LOC115594658. (365 aa)
	SRSF3	Serine and arginine rich splicing factor 3. (214 aa)
	igf2bp2	Insulin like growth factor 2 mRNA binding protein 2. (610 aa)
	nxt2	Nuclear transport factor 2 like export factor 2. (143 aa)
	tsc1	TSC complex subunit 1. (1304 aa)
	LOC115597404	Eukaryotic translation initiation factor 5A-1-like. (163 aa)
	ssb	Small RNA binding exonuclease protection factor La. (392 aa)
	ENSSAUP00010066011	THO complex 2. (1415 aa)
	LOC115579371	Transcription and mRNA export factor ENY2-2-like. (96 aa)
	LOC115591047	THO complex subunit 4-like. (264 aa)
	ncbp2	Nuclear cap binding protein subunit 2. (164 aa)
	ENSSAUP00010064702	annotation not available (89 aa)
	ALYREF	Aly/REF export factor. (272 aa)
	ENSSAUP00010064068	Exportin 5. (1310 aa)
	NUP62	Nucleoporin 62. (563 aa)
	phax	Phosphorylated adaptor for RNA export. (407 aa)
	ENSSAUP00010062302	annotation not available (212 aa)
	ENSSAUP00010062298	annotation not available (134 aa)
	ENSSAUP00010061721	Raftlin family member 2. (440 aa)
	ndc1	NDC1 transmembrane nucleoporin. (671 aa)
	ENSSAUP00010061510	Lymphoid-restricted membrane protein. (1087 aa)
	hnrnpa3	Heterogeneous nuclear ribonucleoprotein A3. (361 aa)
	DDX39A	ATP-dependent RNA helicase DDX39A. (451 aa)
	nup155	Nucleoporin 155. (1367 aa)
	ENSSAUP00010059637	POM121 transmembrane nucleoporin. (1260 aa)
	nup107	Nucleoporin 107. (905 aa)
	ENSSAUP00010059279	annotation not available (244 aa)
	HNRNPA0	Heterogeneous nuclear ribonucleoprotein A0. (194 aa)
	nol6	Nucleolar protein 6. (1145 aa)
	ENSSAUP00010057552	FMRP translational regulator 1. (599 aa)
	LOC115578566	Nucleoporin NUP42-like. (469 aa)
	LOC115578912	Raftlin-like. (701 aa)
	thoc1	THO complex 1. (691 aa)
	LOC115596652	Protein quaking-B-like. (340 aa)
	PNPT1	Polyribonucleotide nucleotidyltransferase 1. (770 aa)
	nup160	Nucleoporin 160. (1372 aa)
	igf2bp3	Insulin like growth factor 2 mRNA binding protein 3. (605 aa)
	sidt2	SID1 transmembrane family member 2. (894 aa)
	nup88	Nucleoporin 88. (718 aa)
	LOC115566634	TGF-beta receptor type-2-like. (589 aa)
	ENSSAUP00010051308	Serine and arginine rich splicing factor 3a. (192 aa)
	nup85	Nucleoporin 85. (651 aa)
	TGFBR2	Transforming growth factor beta receptor 2. (542 aa)
	cetn3	Centrin 3. (169 aa)
	LOC115571785	Protein quaking-B-like. (349 aa)
	gle1	GLE1 RNA export mediator. (719 aa)
	hnrnpa1	Heterogeneous nuclear ribonucleoprotein A1. (344 aa)
	LOC115588252	ranBP2-like and GRIP domain-containing protein 3. (3092 aa)
	ENSSAUP00010045339	Zgc:153681. (595 aa)
	mrpl18	Mitochondrial ribosomal protein L18. (189 aa)
	LOC115583406	ATP-dependent RNA helicase DDX19B. (492 aa)
	xpot	Exportin for tRNA. (971 aa)
	ENSSAUP00010038964	Nucleoporin 50. (520 aa)
	ENSSAUP00010037777	Translocated promoter region b, nuclear basket protein. (2277 aa)
	rftn1	Raftlin, lipid raft linker 1. (683 aa)
	LOC115566711	Transcription and mRNA export factor ENY2-2. (107 aa)
	casc3	CASC3 exon junction complex subunit. (786 aa)
	thoc6	THO complex 6. (363 aa)
	ENSSAUP00010036489	Chromatin target of PRMT1a. (270 aa)
	ENSSAUP00010036005	Nucleoporin 37. (344 aa)
	EIF5AL1	Eukaryotic translation initiation factor 5A. (155 aa)
	nup188	Nucleoporin 188. (1746 aa)
	kpnb1	Karyopherin subunit beta 1. (1109 aa)
	rbm8a	RNA binding motif protein 8A. (180 aa)
	sem1	SEM1 26S proteasome complex subunit. (69 aa)
	ENSSAUP00010031301	annotation not available (213 aa)
	thoc5	THO complex 5. (687 aa)
	nup58	Nucleoporin 58. (595 aa)
	ENSSAUP00010028390	YTH domain containing 1. (626 aa)
	slbp	Stem-loop binding protein. (279 aa)
	ENSSAUP00010026756	Exportin 1 (CRM1 homolog, yeast) b. (1079 aa)
	TOMM20	Mitochondrial import receptor subunit TOM20 homolog. (146 aa)
	ENSSAUP00010024811	Translocated promoter region a, nuclear basket protein. (2072 aa)
	ENSSAUP00010024533	annotation not available (1706 aa)
	LOC115587203	Nuclear receptor coactivator 5-like. (433 aa)
	ENSSAUP00010024071	annotation not available (468 aa)
	LOC115578667	Mitochondrial import receptor subunit TOM20 homolog. (146 aa)
	ENSSAUP00010023042	QKI, KH domain containing, RNA binding a. (394 aa)
	NUP54	Nucleoporin 54. (626 aa)
	snupn	Snurportin 1. (374 aa)
	ENSSAUP00010022102	RAN, member RAS oncogene family. (232 aa)
	nup93	Nucleoporin 93. (820 aa)
	LOC115567159	Nucleoporin SEH1. (398 aa)
	ENSSAUP00010020330	Si:dkey-101k6.5. (609 aa)
	ncbp3	Nuclear cap binding subunit 3. (696 aa)
	sarnp	SAP domain containing ribonucleoprotein. (220 aa)
	nup98	Nucleoporin 98. (1836 aa)
	magoh	Mago homolog, exon junction complex subunit. (147 aa)
	nutf2	Nuclear transport factor 2. (127 aa)
	ENSSAUP00010017046	annotation not available (103 aa)
	srsf7	Serine and arginine rich splicing factor 7. (263 aa)
	ENSSAUP00010015047	Polymerase (DNA-directed), delta interacting protein 3. (460 aa)
	fyttd1	Forty-two-three domain containing 1. (320 aa)
	ENSSAUP00010014301	THO complex 7. (228 aa)
	pcid2	PCI domain containing 2. (399 aa)
	NCBP1	Nuclear cap binding protein subunit 1. (795 aa)
	thoc3	THO complex 3. (352 aa)
	zc3h11a	Zinc finger CCCH-type containing 11A. (930 aa)
	mcm3ap	Minichromosome maintenance complex component 3 associated protein. (2116 aa)
	sec13	SEC13 homolog, nuclear pore and COPII coat complex component. (320 aa)
	upf3a	UPF3A regulator of nonsense mediated mRNA decay. (463 aa)
	nup153	Nucleoporin 153. (1557 aa)
	LOC115572337	Uncharacterized LOC115572337. (529 aa)
	rae1	Ribonucleic acid export 1. (368 aa)
	ybx1	Y-box binding protein 1. (303 aa)
	LOC115584329	ATP-dependent RNA helicase DDX19A-like. (487 aa)
	polr2d	RNA polymerase II subunit D. (347 aa)
	ENSSAUP00010000266	Exportin 1 (CRM1 homolog, yeast) a. (1081 aa)
	LOC115583072-2	Eukaryotic initiation factor 4A-III. (441 aa)
	LOC115583072	Eukaryotic initiation factor 4A-III. (429 aa)
	dhx9	DExH-box helicase 9. (1314 aa)
	LOC115575691	Insulin-like growth factor 2 mRNA-binding protein 1. (601 aa)

Your Current Organism:

Sparus aurata

NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALYREF	DDX39A	ENSSAUP00010064697	ENSSAUP00010060783	Aly/REF export factor.	ATP-dependent RNA helicase DDX39A.	0.989
ALYREF	ENSSAUP00010014301	ENSSAUP00010064697	ENSSAUP00010014301	Aly/REF export factor.	THO complex 7.	0.962
ALYREF	ENSSAUP00010015047	ENSSAUP00010064697	ENSSAUP00010015047	Aly/REF export factor.	Polymerase (DNA-directed), delta interacting protein 3.	0.834
ALYREF	ENSSAUP00010017046	ENSSAUP00010064697	ENSSAUP00010017046	Aly/REF export factor.	annotation not available	0.483
ALYREF	ENSSAUP00010024071	ENSSAUP00010064697	ENSSAUP00010024071	Aly/REF export factor.	annotation not available	0.989
ALYREF	ENSSAUP00010024533	ENSSAUP00010064697	ENSSAUP00010024533	Aly/REF export factor.	annotation not available	0.868
ALYREF	ENSSAUP00010024811	ENSSAUP00010064697	ENSSAUP00010024811	Aly/REF export factor.	Translocated promoter region a, nuclear basket protein.	0.865
ALYREF	ENSSAUP00010031301	ENSSAUP00010064697	ENSSAUP00010031301	Aly/REF export factor.	annotation not available	0.443
ALYREF	ENSSAUP00010036005	ENSSAUP00010064697	ENSSAUP00010036005	Aly/REF export factor.	Nucleoporin 37.	0.749
ALYREF	ENSSAUP00010036489	ENSSAUP00010064697	ENSSAUP00010036489	Aly/REF export factor.	Chromatin target of PRMT1a.	0.912
ALYREF	ENSSAUP00010037777	ENSSAUP00010064697	ENSSAUP00010037777	Aly/REF export factor.	Translocated promoter region b, nuclear basket protein.	0.865
ALYREF	ENSSAUP00010038964	ENSSAUP00010064697	ENSSAUP00010038964	Aly/REF export factor.	Nucleoporin 50.	0.732
ALYREF	ENSSAUP00010045339	ENSSAUP00010064697	ENSSAUP00010045339	Aly/REF export factor.	Zgc:153681.	0.997
ALYREF	ENSSAUP00010051308	ENSSAUP00010064697	ENSSAUP00010051308	Aly/REF export factor.	Serine and arginine rich splicing factor 3a.	0.901
ALYREF	ENSSAUP00010059279	ENSSAUP00010064697	ENSSAUP00010059279	Aly/REF export factor.	annotation not available	0.754
ALYREF	ENSSAUP00010062298	ENSSAUP00010064697	ENSSAUP00010062298	Aly/REF export factor.	annotation not available	0.483
ALYREF	ENSSAUP00010062302	ENSSAUP00010064697	ENSSAUP00010062302	Aly/REF export factor.	annotation not available	0.483
ALYREF	ENSSAUP00010066011	ENSSAUP00010064697	ENSSAUP00010066011	Aly/REF export factor.	THO complex 2.	0.994
ALYREF	HNRNPA0	ENSSAUP00010064697	ENSSAUP00010059277	Aly/REF export factor.	Heterogeneous nuclear ribonucleoprotein A0.	0.731
ALYREF	LOC115566711	ENSSAUP00010064697	ENSSAUP00010037651	Aly/REF export factor.	Transcription and mRNA export factor ENY2-2.	0.522