(7 nodes) Gemini of coiled bodies network (Sparus aurata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSAUP00010061017	Nuclear protein, ataxia-telangiectasia locus. (1157 aa)
	gemin7	Gem nuclear organelle associated protein 7. (137 aa)
	HABP4	Intracellular hyaluronan-binding protein 4-like. (366 aa)
	ENSSAUP00010009019	annotation not available (129 aa)
	ENSSAUP00010007549	annotation not available (329 aa)
	gemin6	Gem nuclear organelle associated protein 6. (169 aa)
	LOC115582378	Survival motor neuron protein 1-like. (283 aa)

Your Current Organism:

Sparus aurata

NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSAUP00010007549	HABP4	ENSSAUP00010007549	ENSSAUP00010018458	annotation not available	Intracellular hyaluronan-binding protein 4-like.	0.407
ENSSAUP00010007549	gemin6	ENSSAUP00010007549	ENSSAUP00010000008	annotation not available	Gem nuclear organelle associated protein 6.	0.865
ENSSAUP00010007549	gemin7	ENSSAUP00010007549	ENSSAUP00010032405	annotation not available	Gem nuclear organelle associated protein 7.	0.912
HABP4	ENSSAUP00010007549	ENSSAUP00010018458	ENSSAUP00010007549	Intracellular hyaluronan-binding protein 4-like.	annotation not available	0.407
HABP4	LOC115582378	ENSSAUP00010018458	ENSSAUP00010056670	Intracellular hyaluronan-binding protein 4-like.	Survival motor neuron protein 1-like.	0.473
LOC115582378	HABP4	ENSSAUP00010056670	ENSSAUP00010018458	Survival motor neuron protein 1-like.	Intracellular hyaluronan-binding protein 4-like.	0.473
LOC115582378	gemin6	ENSSAUP00010056670	ENSSAUP00010000008	Survival motor neuron protein 1-like.	Gem nuclear organelle associated protein 6.	0.892
LOC115582378	gemin7	ENSSAUP00010056670	ENSSAUP00010032405	Survival motor neuron protein 1-like.	Gem nuclear organelle associated protein 7.	0.935
gemin6	ENSSAUP00010007549	ENSSAUP00010000008	ENSSAUP00010007549	Gem nuclear organelle associated protein 6.	annotation not available	0.865
gemin6	LOC115582378	ENSSAUP00010000008	ENSSAUP00010056670	Gem nuclear organelle associated protein 6.	Survival motor neuron protein 1-like.	0.892
gemin6	gemin7	ENSSAUP00010000008	ENSSAUP00010032405	Gem nuclear organelle associated protein 6.	Gem nuclear organelle associated protein 7.	0.991
gemin7	ENSSAUP00010007549	ENSSAUP00010032405	ENSSAUP00010007549	Gem nuclear organelle associated protein 7.	annotation not available	0.912
gemin7	LOC115582378	ENSSAUP00010032405	ENSSAUP00010056670	Gem nuclear organelle associated protein 7.	Survival motor neuron protein 1-like.	0.935
gemin7	gemin6	ENSSAUP00010032405	ENSSAUP00010000008	Gem nuclear organelle associated protein 7.	Gem nuclear organelle associated protein 6.	0.991