(30 nodes) Other glycan degradation network (Sparus aurata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	aga	Aspartylglucosaminidase. (338 aa)
	ENSSAUP00010021224	Hexosaminidase A (alpha polypeptide). (571 aa)
	man2c1	Mannosidase alpha class 2C member 1. (1023 aa)
	ENSSAUP00010036667	alpha-L-fucosidase 2. (458 aa)
	man2b1	Mannosidase alpha class 2B member 1. (989 aa)
	LOC115579120	Sialidase-3-like. (393 aa)
	gba2	Glucosylceramidase beta 2. (901 aa)
	FUCA1	alpha-L-fucosidase 1. (448 aa)
	LOC115579042	Tissue alpha-L-fucosidase-like. (458 aa)
	zbtb8b	Zinc finger and BTB domain containing 8B. (525 aa)
	glb1	Galactosidase beta 1. (661 aa)
	engase	endo-beta-N-acetylglucosaminidase. (792 aa)
	LOC115588426	Beta-galactosidase-like. (670 aa)
	neu3	Neuraminidase 3. (409 aa)
	fam149b1	Family with sequence similarity 149 member B1. (680 aa)
	ENSSAUP00010055497	annotation not available (184 aa)
	hexd	Hexosaminidase D. (486 aa)
	neu1	Neuraminidase 1. (399 aa)
	ENSSAUP00010040992	Mannosidase, beta A, lysosomal. (876 aa)
	ENSSAUP00010038425	Rab geranylgeranyltransferase subunit beta. (370 aa)
	gba	Glucosylceramidase beta. (523 aa)
	ENSSAUP00010032832	Transmembrane protein 130. (307 aa)
	hexb	Hexosaminidase subunit beta. (556 aa)
	LOC115594349	Beta-galactosidase-1-like protein 2. (662 aa)
	man2b2	Mannosidase alpha class 2B member 2. (1025 aa)
	ENSSAUP00010027587	Biorientation of chromosomes in cell division 1. (160 aa)
	ENSSAUP00010027586	Stanniocalcin 2b. (239 aa)
	neu4	Neuraminidase 4. (491 aa)
	LOC115597773	Beta-galactosidase-1-like protein 2. (638 aa)
	ENSSAUP00010024314	Si:dkey-224e22.2. (596 aa)

Your Current Organism:

Sparus aurata

NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSAUP00010021224	ENSSAUP00010024314	ENSSAUP00010021224	ENSSAUP00010024314	Hexosaminidase A (alpha polypeptide).	Si:dkey-224e22.2.	0.618
ENSSAUP00010021224	ENSSAUP00010027586	ENSSAUP00010021224	ENSSAUP00010027586	Hexosaminidase A (alpha polypeptide).	Stanniocalcin 2b.	0.618
ENSSAUP00010021224	ENSSAUP00010027587	ENSSAUP00010021224	ENSSAUP00010027587	Hexosaminidase A (alpha polypeptide).	Biorientation of chromosomes in cell division 1.	0.618
ENSSAUP00010021224	ENSSAUP00010040992	ENSSAUP00010021224	ENSSAUP00010040992	Hexosaminidase A (alpha polypeptide).	Mannosidase, beta A, lysosomal.	0.732
ENSSAUP00010021224	ENSSAUP00010055497	ENSSAUP00010021224	ENSSAUP00010055497	Hexosaminidase A (alpha polypeptide).	annotation not available	0.618
ENSSAUP00010021224	LOC115588426	ENSSAUP00010021224	ENSSAUP00010068864	Hexosaminidase A (alpha polypeptide).	Beta-galactosidase-like.	0.879
ENSSAUP00010021224	LOC115594349	ENSSAUP00010021224	ENSSAUP00010032513	Hexosaminidase A (alpha polypeptide).	Beta-galactosidase-1-like protein 2.	0.618
ENSSAUP00010021224	LOC115597773	ENSSAUP00010021224	ENSSAUP00010024318	Hexosaminidase A (alpha polypeptide).	Beta-galactosidase-1-like protein 2.	0.618
ENSSAUP00010021224	glb1	ENSSAUP00010021224	ENSSAUP00010010391	Hexosaminidase A (alpha polypeptide).	Galactosidase beta 1.	0.879
ENSSAUP00010021224	hexb	ENSSAUP00010021224	ENSSAUP00010032652	Hexosaminidase A (alpha polypeptide).	Hexosaminidase subunit beta.	0.850
ENSSAUP00010021224	hexd	ENSSAUP00010021224	ENSSAUP00010049876	Hexosaminidase A (alpha polypeptide).	Hexosaminidase D.	0.905
ENSSAUP00010021224	neu1	ENSSAUP00010021224	ENSSAUP00010043927	Hexosaminidase A (alpha polypeptide).	Neuraminidase 1.	0.712
ENSSAUP00010024314	ENSSAUP00010021224	ENSSAUP00010024314	ENSSAUP00010021224	Si:dkey-224e22.2.	Hexosaminidase A (alpha polypeptide).	0.618
ENSSAUP00010024314	ENSSAUP00010032832	ENSSAUP00010024314	ENSSAUP00010032832	Si:dkey-224e22.2.	Transmembrane protein 130.	0.682
ENSSAUP00010024314	ENSSAUP00010036667	ENSSAUP00010024314	ENSSAUP00010036667	Si:dkey-224e22.2.	alpha-L-fucosidase 2.	0.417
ENSSAUP00010024314	ENSSAUP00010040992	ENSSAUP00010024314	ENSSAUP00010040992	Si:dkey-224e22.2.	Mannosidase, beta A, lysosomal.	0.648
ENSSAUP00010024314	FUCA1	ENSSAUP00010024314	ENSSAUP00010007657	Si:dkey-224e22.2.	alpha-L-fucosidase 1.	0.420
ENSSAUP00010024314	LOC115579042	ENSSAUP00010024314	ENSSAUP00010007661	Si:dkey-224e22.2.	Tissue alpha-L-fucosidase-like.	0.420
ENSSAUP00010024314	fam149b1	ENSSAUP00010024314	ENSSAUP00010066340	Si:dkey-224e22.2.	Family with sequence similarity 149 member B1.	0.592
ENSSAUP00010024314	gba	ENSSAUP00010024314	ENSSAUP00010038090	Si:dkey-224e22.2.	Glucosylceramidase beta.	0.682