STRINGSTRING
ppp2r5a ppp2r5a pabpn1 pabpn1 ppp2r3c ppp2r3c LOC115585352 LOC115585352 fus fus ENSSAUP00010050852 ENSSAUP00010050852 LOC115592409 LOC115592409 LOC115578980 LOC115578980 zc3h3 zc3h3 pnn pnn gle1 gle1 ENSSAUP00010046383 ENSSAUP00010046383 ENSSAUP00010045339 ENSSAUP00010045339 LOC115576300 LOC115576300 upf3b upf3b cstf1 cstf1 ppp2r5e ppp2r5e ENSSAUP00010042912 ENSSAUP00010042912 cirbp cirbp LOC115583406 LOC115583406 ppp2r3a ppp2r3a msl1 msl1 wdr90 wdr90 casc3 casc3 LOC115566663 LOC115566663 srrm1 srrm1 cpsf4 cpsf4 smg5 smg5 LOC115583681 LOC115583681 LOC115566285 LOC115566285 LOC115566026 LOC115566026 ENSSAUP00010035605 ENSSAUP00010035605 hbs1l hbs1l twf2 twf2 c6h3orf67 c6h3orf67 cfap20 cfap20 rbm8a rbm8a ENSSAUP00010033206 ENSSAUP00010033206 st13 st13 ppp4r4 ppp4r4 cpsf6 cpsf6 dusp11 dusp11 tmem240 tmem240 ENSSAUP00010028390 ENSSAUP00010028390 LOC115595417 LOC115595417 ENSSAUP00010026690 ENSSAUP00010026690 papolg papolg ENSSAUP00010026198 ENSSAUP00010026198 LOC115594122 LOC115594122 ints9 ints9 ENSSAUP00010025514 ENSSAUP00010025514 tut1 tut1 LOC115583072 LOC115583072 LOC115583072-2 LOC115583072-2 ppp1cc ppp1cc ENSSAUP00010001058 ENSSAUP00010001058 ssu72 ssu72 fndc10 fndc10 LOC115584329 LOC115584329 ints11 ints11 nedd1 nedd1 LOC115591047 LOC115591047 LOC115579552 LOC115579552 ENSSAUP00010002749 ENSSAUP00010002749 ENSSAUP00010002988 ENSSAUP00010002988 mkrn1 mkrn1 PABPN1L PABPN1L ENSSAUP00010005059 ENSSAUP00010005059 rnf141 rnf141 LOC115583507 LOC115583507 cpsf2 cpsf2 ppp2r5c ppp2r5c WDR33 WDR33 fnbp4 fnbp4 smg6 smg6 ppp4r1 ppp4r1 smg7 smg7 ENSSAUP00010007719 ENSSAUP00010007719 CPSF7 CPSF7 upf3a upf3a pym1 pym1 LOC115581309 LOC115581309 etf1 etf1 PPP2CA PPP2CA sap18 sap18 LOC115574097 LOC115574097 ENSSAUP00010012020 ENSSAUP00010012020 NCBP1 NCBP1 rnmt rnmt LOC115581371 LOC115581371 LOC115572870 LOC115572870 ENSSAUP00010015047 ENSSAUP00010015047 cpsf1 cpsf1 czib czib JAZF1 JAZF1 ENSSAUP00010016299 ENSSAUP00010016299 LOC115589281 LOC115589281 PPP2R2C PPP2R2C LOC115565975 LOC115565975 magoh magoh clp1 clp1 pcf11 pcf11 ppp2r2d ppp2r2d ENSSAUP00010020074 ENSSAUP00010020074 GSPT1 GSPT1 LOC115587825 LOC115587825 LOC115575857 LOC115575857 ENSSAUP00010021895 ENSSAUP00010021895 mkrn2 mkrn2 LOC115567413 LOC115567413 UPF1 UPF1 serac1 serac1 ENSSAUP00010023800 ENSSAUP00010023800 dazap1 dazap1 ENSSAUP00010024071 ENSSAUP00010024071 ENSSAUP00010069384 ENSSAUP00010069384 LOC115592447 LOC115592447 nxt2 nxt2 dclre1b dclre1b ncbp2 ncbp2 CPSF3 CPSF3 ALYREF ALYREF ENSSAUP00010064304 ENSSAUP00010064304 LOC115583020 LOC115583020 pelo pelo LOC115571047 LOC115571047 ppp1r42 ppp1r42 cops5 cops5 zc3h6 zc3h6 LOC115574205 LOC115574205 LOC115595733 LOC115595733 LOC115584374 LOC115584374 LOC115589423 LOC115589423 LOC115586694 LOC115586694 fip1l1 fip1l1 DDX39A DDX39A LOC115575579 LOC115575579 ENSSAUP00010059878 ENSSAUP00010059878 UPF2 UPF2 LOC115587803 LOC115587803 LOC115577106 LOC115577106 ppp2ca ppp2ca rngtt rngtt ENSSAUP00010055124 ENSSAUP00010055124 PPP1CB PPP1CB LOC115589215 LOC115589215
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ppp2r5aProtein phosphatase 2 regulatory subunit B'alpha. (521 aa)
pabpn1poly(A) binding protein nuclear 1. (269 aa)
ppp2r3cProtein phosphatase 2 regulatory subunit B''gamma. (491 aa)
LOC115585352Embryonic polyadenylate-binding protein-like. (652 aa)
fusFUS RNA binding protein. (557 aa)
ENSSAUP00010050852Retinoblastoma binding protein 6. (1711 aa)
LOC115592409Uncharacterized LOC115592409. (227 aa)
LOC115578980Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B gamma isoform-like. (493 aa)
zc3h3Zinc finger CCCH-type containing 3. (934 aa)
pnnPinin, desmosome associated protein. (709 aa)
gle1GLE1 RNA export mediator. (719 aa)
ENSSAUP00010046383Transmembrane protein 223. (242 aa)
ENSSAUP00010045339Zgc:153681. (595 aa)
LOC115576300RNA-binding protein with serine-rich domain 1-like. (287 aa)
upf3bUPF3B regulator of nonsense mediated mRNA decay. (544 aa)
cstf1Cleavage stimulation factor subunit 1. (431 aa)
ppp2r5eProtein phosphatase 2 regulatory subunit B'epsilon. (546 aa)
ENSSAUP00010042912DNA cross-link repair 1A (PSO2 homolog, S. cerevisiae). (989 aa)
cirbpCold inducible RNA binding protein. (182 aa)
LOC115583406ATP-dependent RNA helicase DDX19B. (492 aa)
ppp2r3aProtein phosphatase 2 regulatory subunit B''alpha. (1404 aa)
msl1MSL complex subunit 1. (534 aa)
wdr90WD repeat domain 90. (1830 aa)
casc3CASC3 exon junction complex subunit. (786 aa)
LOC115566663Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform. (651 aa)
srrm1Serine and arginine repetitive matrix 1. (872 aa)
cpsf4Cleavage and polyadenylation specific factor 4. (266 aa)
smg5SMG5 nonsense mediated mRNA decay factor. (1121 aa)
LOC115583681TAR DNA-binding protein 43-like. (482 aa)
LOC115566285Polyadenylate-binding protein 4-like. (650 aa)
LOC115566026RNA-binding protein FUS-like. (425 aa)
ENSSAUP00010035605Transmembrane protein 258. (79 aa)
hbs1lHBS1 like translational GTPase. (701 aa)
twf2Twinfilin actin binding protein 2. (598 aa)
c6h3orf67Chromosome 6 C3orf67 homolog. (779 aa)
cfap20Cilia and flagella associated protein 20. (194 aa)
rbm8aRNA binding motif protein 8A. (180 aa)
ENSSAUP00010033206Cleavage stimulation factor, 3' pre-RNA, subunit 2. (541 aa)
st13ST13 Hsp70 interacting protein. (367 aa)
ppp4r4Protein phosphatase 4 regulatory subunit 4. (970 aa)
cpsf6Cleavage and polyadenylation specific factor 6. (585 aa)
dusp11Dual specificity phosphatase 11. (360 aa)
tmem240Transmembrane protein 240. (175 aa)
ENSSAUP00010028390YTH domain containing 1. (626 aa)
LOC115595417Uncharacterized LOC115595417. (359 aa)
ENSSAUP00010026690Musashi RNA-binding protein 2a. (416 aa)
papolgpoly(A) polymerase gamma. (831 aa)
ENSSAUP00010026198Cleavage stimulation factor, 3' pre-RNA, subunit 3. (726 aa)
LOC115594122RNA-binding protein 4-like. (540 aa)
ints9Integrator complex subunit 9. (675 aa)
ENSSAUP00010025514SMG1 nonsense mediated mRNA decay associated PI3K related kinase. (3644 aa)
tut1Terminal uridylyl transferase 1, U6 snRNA-specific. (797 aa)
LOC115583072Eukaryotic initiation factor 4A-III. (429 aa)
LOC115583072-2Eukaryotic initiation factor 4A-III. (441 aa)
ppp1ccProtein phosphatase 1 catalytic subunit gamma. (348 aa)
ENSSAUP00010001058Eukaryotic translation initiation factor 2A. (299 aa)
ssu72SSU72 homolog, RNA polymerase II CTD phosphatase. (194 aa)
fndc10Fibronectin type III domain containing 10. (345 aa)
LOC115584329ATP-dependent RNA helicase DDX19A-like. (487 aa)
ints11Integrator complex subunit 11. (601 aa)
nedd1NEDD1 gamma-tubulin ring complex targeting factor. (658 aa)
LOC115591047THO complex subunit 4-like. (264 aa)
LOC115579552Uncharacterized LOC115579552. (898 aa)
ENSSAUP00010002749Protein phosphatase 2, regulatory subunit B', beta. (420 aa)
ENSSAUP00010002988Poly A binding protein, cytoplasmic 1 b. (637 aa)
mkrn1Makorin ring finger protein 1. (517 aa)
PABPN1LPABPN1 like, cytoplasmic. (268 aa)
ENSSAUP00010005059annotation not available (329 aa)
rnf141Ring finger protein 141. (228 aa)
LOC115583507RNA-binding protein Musashi homolog 1-like. (350 aa)
cpsf2Cleavage and polyadenylation specific factor 2. (787 aa)
ppp2r5cProtein phosphatase 2 regulatory subunit B'gamma. (573 aa)
WDR33WD repeat domain 33. (1556 aa)
fnbp4Formin binding protein 4. (899 aa)
smg6SMG6 nonsense mediated mRNA decay factor. (1653 aa)
ppp4r1Protein phosphatase 4 regulatory subunit 1. (1014 aa)
smg7SMG7 nonsense mediated mRNA decay factor. (1211 aa)
ENSSAUP00010007719Zinc finger CCCH-type containing 4. (747 aa)
CPSF7Cleavage and polyadenylation specific factor 7. (457 aa)
upf3aUPF3A regulator of nonsense mediated mRNA decay. (463 aa)
pym1PYM homolog 1, exon junction complex associated factor. (212 aa)
LOC115581309RNA-binding protein Musashi homolog 1. (349 aa)
etf1Eukaryotic translation termination factor 1. (443 aa)
PPP2CASerine/threonine-protein phosphatase 2A catalytic subunit alpha isoform-like. (309 aa)
sap18Sin3A associated protein 18. (152 aa)
LOC115574097Cleavage and polyadenylation specificity factor subunit 3-like. (696 aa)
ENSSAUP00010012020annotation not available (299 aa)
NCBP1Nuclear cap binding protein subunit 1. (795 aa)
rnmtRNA guanine-7 methyltransferase. (379 aa)
LOC115581371Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform. (309 aa)
LOC115572870Regulator of nonsense transcripts 1-like. (1113 aa)
ENSSAUP00010015047Polymerase (DNA-directed), delta interacting protein 3. (460 aa)
cpsf1Cleavage and polyadenylation specific factor 1. (1474 aa)
czibCXXC motif containing zinc binding protein. (160 aa)
JAZF1Juxtaposed with another zinc finger protein 1-like. (303 aa)
ENSSAUP00010016299PIH1 domain containing 3. (175 aa)
LOC115589281Apoptotic chromatin condensation inducer in the nucleus-like. (1229 aa)
PPP2R2CProtein phosphatase 2 regulatory subunit Bgamma. (499 aa)
LOC115565975Serine/threonine-protein phosphatase PP1-beta catalytic subunit-like. (343 aa)
magohMago homolog, exon junction complex subunit. (147 aa)
clp1Cleavage and polyadenylation factor I subunit 1. (444 aa)
pcf11PCF11 cleavage and polyadenylation factor subunit. (1666 aa)
ppp2r2dProtein phosphatase 2 regulatory subunit Bdelta. (453 aa)
ENSSAUP00010020074TAR DNA binding protein, like. (401 aa)
GSPT1G1 to S phase transition 1. (586 aa)
LOC115587825Symplekin-like. (1253 aa)
LOC115575857Eukaryotic peptide chain release factor GTP-binding subunit ERF3A-like. (586 aa)
ENSSAUP00010021895annotation not available (1089 aa)
mkrn2Makorin ring finger protein 2. (414 aa)
LOC115567413Polyadenylate-binding protein 1-like. (635 aa)
UPF1UPF1 RNA helicase and ATPase. (1106 aa)
serac1Serine active site containing 1. (659 aa)
ENSSAUP00010023800annotation not available (87 aa)
dazap1DAZ associated protein 1. (451 aa)
ENSSAUP00010024071annotation not available (468 aa)
ENSSAUP00010069384Protein phosphatase 2, regulatory subunit B, gamma a. (499 aa)
LOC115592447Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform. (462 aa)
nxt2Nuclear transport factor 2 like export factor 2. (143 aa)
dclre1bDNA cross-link repair 1B. (612 aa)
ncbp2Nuclear cap binding protein subunit 2. (164 aa)
CPSF3Cleavage and polyadenylation specific factor 3. (702 aa)
ALYREFAly/REF export factor. (272 aa)
ENSSAUP00010064304Nudix hydrolase 21. (237 aa)
LOC115583020WD repeat-containing protein 82-like. (606 aa)
peloPelota mRNA surveillance and ribosome rescue factor. (385 aa)
LOC115571047Serine/threonine-protein phosphatase alpha-2 isoform-like. (327 aa)
ppp1r42Protein phosphatase 1 regulatory subunit 42. (315 aa)
cops5COP9 signalosome subunit 5. (358 aa)
zc3h6Zinc finger CCCH-type containing 6. (1162 aa)
LOC115574205Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform-like. (577 aa)
LOC115595733Protein mono-ADP-ribosyltransferase PARP12-like. (1027 aa)
LOC115584374E3 ubiquitin-protein ligase makorin-1-like. (411 aa)
LOC115589423pre-mRNA 3'-end-processing factor FIP1-like. (586 aa)
LOC115586694Twinfilin-1-like. (350 aa)
fip1l1Factor interacting with PAPOLA and CPSF1. (439 aa)
DDX39AATP-dependent RNA helicase DDX39A. (451 aa)
LOC115575579Serine/threonine-protein phosphatase alpha-2 isoform-like. (334 aa)
ENSSAUP00010059878annotation not available (255 aa)
UPF2UPF2 regulator of nonsense mediated mRNA decay. (1278 aa)
LOC115587803Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit beta-like. (580 aa)
LOC115577106Juxtaposed with another zinc finger protein 1. (243 aa)
ppp2caProtein phosphatase 2 catalytic subunit alpha. (309 aa)
rngttRNA guanylyltransferase and 5'-phosphatase. (602 aa)
ENSSAUP00010055124Protein phosphatase 2, regulatory subunit B, alpha a. (440 aa)
PPP1CBProtein phosphatase 1 catalytic subunit beta. (359 aa)
LOC115589215Serine/threonine-protein phosphatase PP1-beta catalytic subunit. (334 aa)
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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