STRINGSTRING
Cdt1 Cdt1 pms1 pms1 Pold1 Pold1 mad2l2 mad2l2 dmc1 dmc1 Ercc4 Ercc4 Rfc1 Rfc1 ENSLCAP00010002675 ENSLCAP00010002675 recql5 recql5 LOC108875967 LOC108875967 dbf4 dbf4 ENSLCAP00010004003 ENSLCAP00010004003 mphosph9 mphosph9 lig1 lig1 ENSLCAP00010005350 ENSLCAP00010005350 rhno1 rhno1 Rmi2 Rmi2 LOC108898738 LOC108898738 brca1 brca1 ENSLCAP00010006345 ENSLCAP00010006345 Rbbp8 Rbbp8 ENSLCAP00010006661 ENSLCAP00010006661 ENSLCAP00010006675 ENSLCAP00010006675 Orc5 Orc5 cdc45 cdc45 pold3 pold3 gins2 gins2 pcna pcna pola2 pola2 ENSLCAP00010008081 ENSLCAP00010008081 ENSLCAP00010008183 ENSLCAP00010008183 Msh3 Msh3 mcm6 mcm6 ENSLCAP00010008769 ENSLCAP00010008769 pole3 pole3 tipin tipin dscc1 dscc1 blm blm Rad1 Rad1 mcm4 mcm4 ENSLCAP00010011268 ENSLCAP00010011268 cdh17 cdh17 mcm3 mcm3 ENSLCAP00010011831 ENSLCAP00010011831 rpa3 rpa3 Pms2 Pms2 ENSLCAP00010013661 ENSLCAP00010013661 Rev1 Rev1 stn1 stn1 rad51d rad51d hus1 hus1 rad54l rad54l Mcmbp Mcmbp LOC108883334 LOC108883334 gins3 gins3 tdrd3 tdrd3 xpa xpa fen1 fen1 chek1 chek1 Rfc2 Rfc2 exd2 exd2 ercc5 ercc5 Top3a Top3a rad9a rad9a polh polh mcm2 mcm2 rpa2 rpa2 rad51b rad51b cdca7l cdca7l ENSLCAP00010027006 ENSLCAP00010027006 ENSLCAP00010027048 ENSLCAP00010027048 mcm9 mcm9 MCMDC2 MCMDC2 Orc4 Orc4 ENSLCAP00010029188 ENSLCAP00010029188 gmnn gmnn ENSLCAP00010029854 ENSLCAP00010029854 Brca2 Brca2 rad52 rad52 ENSLCAP00010031718 ENSLCAP00010031718 ENSLCAP00010032855 ENSLCAP00010032855 LOC108900468 LOC108900468 ENSLCAP00010034255 ENSLCAP00010034255 XRCC2 XRCC2 Rfc5 Rfc5 Mre11 Mre11 ENSLCAP00010036720 ENSLCAP00010036720 Xrcc3 Xrcc3 wdhd1 wdhd1 atrip atrip rad51c rad51c Msh2 Msh2 Pole2 Pole2 prim1 prim1 Mlh3 Mlh3 Cdca7l Cdca7l LOC108880436 LOC108880436 ten1 ten1 rad50 rad50 ercc1 ercc1 timeless timeless Msh6 Msh6 gins1 gins1 chtf8 chtf8 mcm5 mcm5 Orc3 Orc3 msh4 msh4 mcm10 mcm10 ENSLCAP00010047538 ENSLCAP00010047538 fbh1 fbh1 mcm7 mcm7 pif1 pif1 Mlh1 Mlh1 cdc7 cdc7 rfc3 rfc3 ENSLCAP00010050488 ENSLCAP00010050488 ENSLCAP00010051639 ENSLCAP00010051639 RPA1 RPA1 top3b top3b pold2 pold2 pold4 pold4 rfc4 rfc4 Cdca7 Cdca7 chtf18 chtf18 Dna2 Dna2 pole4 pole4 LOC108881387 LOC108881387 gins4 gins4 rad9b rad9b Prim2 Prim2 Slf1 Slf1 polk polk meiob meiob pole pole rmi1 rmi1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Cdt1Chromatin licensing and DNA replication factor 1. (482 aa)
pms1HMG box domain-containing protein. (919 aa)
Pold1DNA polymerase. (1098 aa)
mad2l2HORMA domain-containing protein. (210 aa)
dmc1Uncharacterized protein; Belongs to the RecA family. (342 aa)
Ercc4Excision repair cross-complementation group 4. (889 aa)
Rfc1Replication factor C subunit 1. (1148 aa)
ENSLCAP00010002675Cell division control protein; Involved in the initiation of DNA replication. Also participates in checkpoint controls that ensure DNA replication is completed before mitosis is initiated; Belongs to the CDC6/cdc18 family. (556 aa)
recql5Uncharacterized protein. (1020 aa)
LOC108875967Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (606 aa)
dbf4Uncharacterized protein. (628 aa)
ENSLCAP00010004003REV3-like, polymerase (DNA directed), zeta, catalytic subunit. (2860 aa)
mphosph9Uncharacterized protein. (1287 aa)
lig1DNA ligase. (1015 aa)
ENSLCAP00010005350Minichromosome maintenance 8 homologous recombination repair factor; Belongs to the MCM family. (806 aa)
rhno1Uncharacterized protein. (300 aa)
Rmi2RecQ mediated genome instability 2. (91 aa)
LOC108898738DBF4-type domain-containing protein. (841 aa)
brca1Uncharacterized protein. (1411 aa)
ENSLCAP00010006345Origin recognition complex subunit 1; Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent, however specific DNA sequences that define origins of replication have not been identified so far. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication. (869 aa)
Rbbp8SAE2 domain-containing protein. (73 aa)
ENSLCAP00010006661Piezo-type mechanosensitive ion channel component. (2201 aa)
ENSLCAP00010006675Uncharacterized protein. (176 aa)
Orc5Origin recognition complex, subunit 5. (449 aa)
cdc45Uncharacterized protein. (568 aa)
pold3Uncharacterized protein. (446 aa)
gins2DNA replication complex GINS protein PSF2; Belongs to the GINS2/PSF2 family. (186 aa)
pcnaProliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (260 aa)
pola2DNA polymerase alpha subunit B; Accessory subunit of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which plays an essential role in the initiation of DNA synthesis. (602 aa)
ENSLCAP00010008081Tumor protein p53 binding protein, 1. (1495 aa)
ENSLCAP00010008183RecQ helicase-like 4. (1236 aa)
Msh3MutS homolog 3 (E. coli); Component of the post-replicative DNA mismatch repair system (MMR). (1004 aa)
mcm6DNA helicase; Belongs to the MCM family. (832 aa)
ENSLCAP00010008769Origin recognition complex, subunit 2. (534 aa)
pole3CBFD_NFYB_HMF domain-containing protein. (149 aa)
tipinTIMELESS-interacting protein; Plays an important role in the control of DNA replication and the maintenance of replication fork stability. Belongs to the CSM3 family. (302 aa)
dscc1Uncharacterized protein. (390 aa)
blmUncharacterized protein. (1413 aa)
Rad1RAD1 homolog (S. pombe). (329 aa)
mcm4DNA helicase; Belongs to the MCM family. (860 aa)
ENSLCAP00010011268MutS homolog 5. (799 aa)
cdh17Uncharacterized protein. (937 aa)
mcm3DNA helicase; Belongs to the MCM family. (815 aa)
ENSLCAP00010011831DNA polymerase. (1466 aa)
rpa3Uncharacterized protein. (122 aa)
Pms2PMS1 homolog 2, mismatch repair system component. (861 aa)
ENSLCAP00010013661RAD54 like. (723 aa)
Rev1DNA repair protein REV1; Deoxycytidyl transferase involved in DNA repair. Transfers a dCMP residue from dCTP to the 3'-end of a DNA primer in a template- dependent reaction. May assist in the first step in the bypass of abasic lesions by the insertion of a nucleotide opposite the lesion. Required for normal induction of mutations by physical and chemical agents; Belongs to the DNA polymerase type-Y family. (1013 aa)
stn1CST complex subunit STN1; Component of the CST complex proposed to act as a specialized replication factor promoting DNA replication under conditions of replication stress or natural replication barriers such as the telomere duplex. The CST complex binds single-stranded DNA with high affinity in a sequence-independent manner, while isolated subunits bind DNA with low affinity by themselves. Initially the CST complex has been proposed to protect telomeres from DNA degradation. However, the CST complex has been shown to be involved in several aspects of telomere replication. (382 aa)
rad51dRECA_2 domain-containing protein. (334 aa)
hus1Checkpoint protein; Belongs to the HUS1 family. (285 aa)
rad54lUncharacterized protein. (740 aa)
McmbpMinichromosome maintenance complex binding protein. (636 aa)
LOC108883334Origin recognition complex subunit 1; Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent, however specific DNA sequences that define origins of replication have not been identified so far. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication. (940 aa)
gins3Sld5 domain-containing protein. (211 aa)
tdrd3Uncharacterized protein. (785 aa)
xpaXPA_C domain-containing protein. (340 aa)
fen1Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...] (380 aa)
chek1Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (486 aa)
Rfc2Replication factor C (activator 1) 2. (444 aa)
exd23'-5' exonuclease domain-containing protein. (639 aa)
ercc5Uncharacterized protein. (1138 aa)
Top3aDNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family. (1041 aa)
rad9aCell cycle checkpoint control protein; Belongs to the rad9 family. (393 aa)
polhUmuC domain-containing protein. (738 aa)
mcm2DNA helicase; Belongs to the MCM family. (916 aa)
rpa2RPA_C domain-containing protein. (290 aa)
rad51bRECA_2 domain-containing protein. (386 aa)
cdca7lzf-4CXXC_R1 domain-containing protein. (417 aa)
ENSLCAP00010027006Basic, immunoglobulin-like variable motif containing. (473 aa)
ENSLCAP00010027048DNA repair protein RAD51 homolog; Plays an important role in homologous strand exchange, a key step in DNA repair through homologous recombination. Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Catalyzes the recognition of homology and strand exchange between homologous DNA partners to form a joint molecule between a processed DNA break and the repair template. Binds to single-stranded DNA in an ATP-dependent manner to form nucleoprotein filaments which are essential for the homology search and strand exchange. Belongs to the RecA family. RAD51 sub [...] (314 aa)
mcm9MCM domain-containing protein; Belongs to the MCM family. (1238 aa)
MCMDC2MCM_lid domain-containing protein. (678 aa)
Orc4Origin recognition complex subunit 4; Component of the origin recognition complex (ORC) that binds origins of replication; Belongs to the ORC4 family. (462 aa)
ENSLCAP00010029188ATR serine/threonine kinase; Belongs to the PI3/PI4-kinase family. (2552 aa)
gmnnUncharacterized protein. (234 aa)
ENSLCAP00010029854ATPase family, AAA domain containing 5a. (1490 aa)
Brca2Breast cancer 2, early onset. (2872 aa)
rad52Uncharacterized protein. (435 aa)
ENSLCAP00010031718DNA topoisomerase II binding protein 1. (1435 aa)
ENSLCAP00010032855RAD17 checkpoint clamp loader component. (467 aa)
LOC108900468Regulator of telomere elongation helicase 1; ATP-dependent DNA helicase implicated in telomere-length regulation, DNA repair and the maintenance of genomic stability. Acts as an anti-recombinase to counteract toxic recombination and limit crossover during meiosis. Regulates meiotic recombination and crossover homeostasis by physically dissociating strand invasion events and thereby promotes noncrossover repair by meiotic synthesis dependent strand annealing (SDSA) as well as disassembly of D loop recombination intermediates. Also disassembles T loops and prevents telomere fragility by [...] (1108 aa)
ENSLCAP00010034255Exonuclease 1. (607 aa)
XRCC2X-ray repair cross complementing 2. (217 aa)
Rfc5AAA domain-containing protein. (350 aa)
Mre11Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing. (666 aa)
ENSLCAP00010036720UmuC domain-containing protein. (598 aa)
Xrcc3X-ray repair complementing defective repair in Chinese hamster cells 3. (342 aa)
wdhd1Uncharacterized protein. (1130 aa)
atripUncharacterized protein. (873 aa)
rad51cRECA_2 domain-containing protein. (381 aa)
Msh2DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (908 aa)
Pole2DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family. (513 aa)
prim1DNA primase; Belongs to the eukaryotic-type primase small subunit family. (424 aa)
Mlh3MutL homolog 3 (E. coli). (1177 aa)
Cdca7lCell division cycle associated 7b. (416 aa)
LOC108880436Uncharacterized protein. (814 aa)
ten1Uncharacterized protein. (124 aa)
rad50Zinc-hook domain-containing protein. (1313 aa)
ercc1Uncharacterized protein. (360 aa)
timelessUncharacterized protein. (1251 aa)
Msh6DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (1241 aa)
gins1Sld5 domain-containing protein. (196 aa)
chtf8Uncharacterized protein. (198 aa)
mcm5DNA helicase; Belongs to the MCM family. (737 aa)
Orc3Origin recognition complex, subunit 3. (712 aa)
msh4DNA_MISMATCH_REPAIR_2 domain-containing protein. (925 aa)
mcm10Mcm10 domain-containing protein. (908 aa)
ENSLCAP00010047538F-box domain-containing protein. (743 aa)
fbh1F-box domain-containing protein. (1078 aa)
mcm7DNA replication licensing factor MCM7; Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differential [...] (729 aa)
pif1ATP-dependent DNA helicase PIF1; DNA-dependent ATPase and 5'-3' DNA helicase required for the maintenance of both mitochondrial and nuclear genome stability. (632 aa)
Mlh1MutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli). (716 aa)
cdc7Protein kinase domain-containing protein. (610 aa)
rfc3AAA domain-containing protein. (356 aa)
ENSLCAP00010050488Zgc:110269. (339 aa)
ENSLCAP00010051639Uncharacterized protein. (521 aa)
RPA1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (678 aa)
top3bDNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family. (858 aa)
pold2Uncharacterized protein. (471 aa)
pold4Uncharacterized protein. (108 aa)
rfc4AAA domain-containing protein. (357 aa)
Cdca7Cell division cycle associated 7a. (391 aa)
chtf18AAA domain-containing protein. (921 aa)
Dna2DNA replication helicase/nuclease 2. (1408 aa)
pole4CBFD_NFYB_HMF domain-containing protein. (129 aa)
LOC108881387SCY domain-containing protein. (125 aa)
gins4DNA replication complex GINS protein SLD5; The GINS complex plays an essential role in the initiation of DNA replication; Belongs to the GINS4/SLD5 family. (224 aa)
rad9bUncharacterized protein. (328 aa)
Prim2DNA primase large subunit; Regulatory subunit of the DNA primase complex and component of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which play an essential role in the initiation of DNA synthesis. The primase subunit of the polymerase alpha complex initiates DNA synthesis by oligomerising short RNA primers on both leading and lagging strands. (502 aa)
Slf1SMC5-SMC6 complex localization factor 1. (752 aa)
polkUmuC domain-containing protein. (887 aa)
meiobUncharacterized protein. (460 aa)
poleDNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2296 aa)
rmi1DUF1767 domain-containing protein. (700 aa)
Your Current Organism:
Lates calcarifer
NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch
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