49 items (Lates calcarifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Parp2	Poly [ADP-ribose] polymerase. (658 aa)
	LOC108884881	BH4_2 domain-containing protein. (232 aa)
	LOC108880245	Uncharacterized protein. (268 aa)
	Lmna	Lamin A; Belongs to the intermediate filament family. (671 aa)
	LOC108895594	Uncharacterized protein. (188 aa)
	LOC108872926	Cytochrome c domain-containing protein; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain. (104 aa)
	ENSLCAP00010005203	Cystatin C (amyloid angiopathy and cerebral hemorrhage); Belongs to the cystatin family. (142 aa)
	LOC108874378	Uncharacterized protein. (201 aa)
	ENSLCAP00010005966	Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family. (243 aa)
	ENSLCAP00010005974	Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family. (250 aa)
	casp7	Uncharacterized protein; Belongs to the peptidase C14A family. (316 aa)
	ENSLCAP00010009593	MCL1, BCL2 family apoptosis regulator b. (325 aa)
	xiap	RING-type domain-containing protein. (466 aa)
	casp6	Uncharacterized protein; Belongs to the peptidase C14A family. (301 aa)
	bax	Uncharacterized protein. (192 aa)
	LOC108880527	Uncharacterized protein; Belongs to the intermediate filament family. (595 aa)
	LOC108880508	Uncharacterized protein. (205 aa)
	LOC108893387	Uncharacterized protein. (641 aa)
	parp1	Poly [ADP-ribose] polymerase; Poly-ADP-ribosyltransferase that mediates poly-ADP- ribosylation of proteins and plays a key role in DNA repair. (1014 aa)
	casp2	Uncharacterized protein; Belongs to the peptidase C14A family. (468 aa)
	bok	Uncharacterized protein. (216 aa)
	bcl2	BH4_2 domain-containing protein. (229 aa)
	LOC108886885	Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family. (258 aa)
	csta	Cystatin domain-containing protein. (108 aa)
	LOC108876072	Uncharacterized protein. (269 aa)
	diablo	Uncharacterized protein. (237 aa)
	LOC108883475	BH4_2 domain-containing protein. (213 aa)
	bmf	Uncharacterized protein. (163 aa)
	ENSLCAP00010030057	Uncharacterized protein. (255 aa)
	ENSLCAP00010030143	P53-induced death domain protein 1. (910 aa)
	LOC108879957	Cystatin domain-containing protein. (143 aa)
	ENSLCAP00010033948	Apoptotic protease-activating factor 1; Oligomeric Apaf-1 mediates the cytochrome c-dependent autocatalytic activation of pro-caspase-9 (Apaf-3), leading to the activation of caspase-3 and apoptosis. This activation requires ATP. (1215 aa)
	ENSLCAP00010034456	BH4_2 domain-containing protein. (192 aa)
	ENSLCAP00010035178	DUF4203 domain-containing protein. (249 aa)
	LOC108877511	Cytochrome c domain-containing protein; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain. (104 aa)
	ENSLCAP00010037329	Uncharacterized protein. (130 aa)
	ENSLCAP00010037861	Caspase 3, apoptosis-related cysteine peptidase a; Belongs to the peptidase C14A family. (279 aa)
	bad	Uncharacterized protein. (229 aa)
	LOC108885588	BH4_2 domain-containing protein. (221 aa)
	bcl2l11	Bclx_interact domain-containing protein. (284 aa)
	ENSLCAP00010044598	DUF4203 domain-containing protein. (322 aa)
	LOC108876532	Uncharacterized protein. (147 aa)
	LOC108895937	Uncharacterized protein; Belongs to the peptidase C14A family. (273 aa)
	aven	Uncharacterized protein. (328 aa)
	LOC108879957-2	Cystatin domain-containing protein. (143 aa)
	ENSLCAP00010056772	Poly [ADP-ribose] polymerase. (522 aa)
	CASP3	Caspase 3, apoptosis-related cysteine peptidase b; Belongs to the peptidase C14A family. (259 aa)
	lmnb1	Uncharacterized protein; Belongs to the intermediate filament family. (588 aa)
	casp9	Uncharacterized protein; Belongs to the peptidase C14A family. (457 aa)

Your Current Organism:

Lates calcarifer

NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CASP3	ENSLCAP00010005966	ENSLCAP00010058548	ENSLCAP00010005966	Caspase 3, apoptosis-related cysteine peptidase b; Belongs to the peptidase C14A family.	Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.	0.904
CASP3	ENSLCAP00010005974	ENSLCAP00010058548	ENSLCAP00010005974	Caspase 3, apoptosis-related cysteine peptidase b; Belongs to the peptidase C14A family.	Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.	0.904
CASP3	ENSLCAP00010030057	ENSLCAP00010058548	ENSLCAP00010030057	Caspase 3, apoptosis-related cysteine peptidase b; Belongs to the peptidase C14A family.	Uncharacterized protein.	0.719
CASP3	ENSLCAP00010030143	ENSLCAP00010058548	ENSLCAP00010030143	Caspase 3, apoptosis-related cysteine peptidase b; Belongs to the peptidase C14A family.	P53-induced death domain protein 1.	0.491
CASP3	ENSLCAP00010033948	ENSLCAP00010058548	ENSLCAP00010033948	Caspase 3, apoptosis-related cysteine peptidase b; Belongs to the peptidase C14A family.	Apoptotic protease-activating factor 1; Oligomeric Apaf-1 mediates the cytochrome c-dependent autocatalytic activation of pro-caspase-9 (Apaf-3), leading to the activation of caspase-3 and apoptosis. This activation requires ATP.	0.758
CASP3	ENSLCAP00010037861	ENSLCAP00010058548	ENSLCAP00010037861	Caspase 3, apoptosis-related cysteine peptidase b; Belongs to the peptidase C14A family.	Caspase 3, apoptosis-related cysteine peptidase a; Belongs to the peptidase C14A family.	0.902
CASP3	ENSLCAP00010056772	ENSLCAP00010058548	ENSLCAP00010056772	Caspase 3, apoptosis-related cysteine peptidase b; Belongs to the peptidase C14A family.	Poly [ADP-ribose] polymerase.	0.925
CASP3	LOC108872926	ENSLCAP00010058548	ENSLCAP00010004699	Caspase 3, apoptosis-related cysteine peptidase b; Belongs to the peptidase C14A family.	Cytochrome c domain-containing protein; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.	0.713
CASP3	LOC108876072	ENSLCAP00010058548	ENSLCAP00010027612	Caspase 3, apoptosis-related cysteine peptidase b; Belongs to the peptidase C14A family.	Uncharacterized protein.	0.440
CASP3	LOC108876532	ENSLCAP00010058548	ENSLCAP00010047401	Caspase 3, apoptosis-related cysteine peptidase b; Belongs to the peptidase C14A family.	Uncharacterized protein.	0.943
CASP3	LOC108877511	ENSLCAP00010058548	ENSLCAP00010035605	Caspase 3, apoptosis-related cysteine peptidase b; Belongs to the peptidase C14A family.	Cytochrome c domain-containing protein; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.	0.713
CASP3	LOC108880245	ENSLCAP00010058548	ENSLCAP00010002139	Caspase 3, apoptosis-related cysteine peptidase b; Belongs to the peptidase C14A family.	Uncharacterized protein.	0.440
CASP3	LOC108880527	ENSLCAP00010058548	ENSLCAP00010017371	Caspase 3, apoptosis-related cysteine peptidase b; Belongs to the peptidase C14A family.	Uncharacterized protein; Belongs to the intermediate filament family.	0.403
CASP3	LOC108884881	ENSLCAP00010058548	ENSLCAP00010001507	Caspase 3, apoptosis-related cysteine peptidase b; Belongs to the peptidase C14A family.	BH4_2 domain-containing protein.	0.671
CASP3	LOC108885588	ENSLCAP00010058548	ENSLCAP00010041376	Caspase 3, apoptosis-related cysteine peptidase b; Belongs to the peptidase C14A family.	BH4_2 domain-containing protein.	0.499
CASP3	LOC108886885	ENSLCAP00010058548	ENSLCAP00010023792	Caspase 3, apoptosis-related cysteine peptidase b; Belongs to the peptidase C14A family.	Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.	0.904
CASP3	LOC108893387	ENSLCAP00010058548	ENSLCAP00010021098	Caspase 3, apoptosis-related cysteine peptidase b; Belongs to the peptidase C14A family.	Uncharacterized protein.	0.970
CASP3	Lmna	ENSLCAP00010058548	ENSLCAP00010002923	Caspase 3, apoptosis-related cysteine peptidase b; Belongs to the peptidase C14A family.	Lamin A; Belongs to the intermediate filament family.	0.403
CASP3	Parp2	ENSLCAP00010058548	ENSLCAP00010001180	Caspase 3, apoptosis-related cysteine peptidase b; Belongs to the peptidase C14A family.	Poly [ADP-ribose] polymerase.	0.937
CASP3	bcl2	ENSLCAP00010058548	ENSLCAP00010023115	Caspase 3, apoptosis-related cysteine peptidase b; Belongs to the peptidase C14A family.	BH4_2 domain-containing protein.	0.546