15 items (Lates calcarifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC108880245	Uncharacterized protein. (268 aa)
	xiap	RING-type domain-containing protein. (466 aa)
	LOC108893387	Uncharacterized protein. (641 aa)
	casp2	Uncharacterized protein; Belongs to the peptidase C14A family. (468 aa)
	LOC108876072	Uncharacterized protein. (269 aa)
	diablo	Uncharacterized protein. (237 aa)
	ENSLCAP00010030057	Uncharacterized protein. (255 aa)
	ENSLCAP00010030143	P53-induced death domain protein 1. (910 aa)
	ENSLCAP00010033948	Apoptotic protease-activating factor 1; Oligomeric Apaf-1 mediates the cytochrome c-dependent autocatalytic activation of pro-caspase-9 (Apaf-3), leading to the activation of caspase-3 and apoptosis. This activation requires ATP. (1215 aa)
	ENSLCAP00010037329	Uncharacterized protein. (130 aa)
	ENSLCAP00010037861	Caspase 3, apoptosis-related cysteine peptidase a; Belongs to the peptidase C14A family. (279 aa)
	LOC108876532	Uncharacterized protein. (147 aa)
	aven	Uncharacterized protein. (328 aa)
	CASP3	Caspase 3, apoptosis-related cysteine peptidase b; Belongs to the peptidase C14A family. (259 aa)
	casp9	Uncharacterized protein; Belongs to the peptidase C14A family. (457 aa)

Your Current Organism:

Lates calcarifer

NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CASP3	ENSLCAP00010030057	ENSLCAP00010058548	ENSLCAP00010030057	Caspase 3, apoptosis-related cysteine peptidase b; Belongs to the peptidase C14A family.	Uncharacterized protein.	0.719
CASP3	ENSLCAP00010030143	ENSLCAP00010058548	ENSLCAP00010030143	Caspase 3, apoptosis-related cysteine peptidase b; Belongs to the peptidase C14A family.	P53-induced death domain protein 1.	0.491
CASP3	ENSLCAP00010033948	ENSLCAP00010058548	ENSLCAP00010033948	Caspase 3, apoptosis-related cysteine peptidase b; Belongs to the peptidase C14A family.	Apoptotic protease-activating factor 1; Oligomeric Apaf-1 mediates the cytochrome c-dependent autocatalytic activation of pro-caspase-9 (Apaf-3), leading to the activation of caspase-3 and apoptosis. This activation requires ATP.	0.758
CASP3	ENSLCAP00010037861	ENSLCAP00010058548	ENSLCAP00010037861	Caspase 3, apoptosis-related cysteine peptidase b; Belongs to the peptidase C14A family.	Caspase 3, apoptosis-related cysteine peptidase a; Belongs to the peptidase C14A family.	0.902
CASP3	LOC108876072	ENSLCAP00010058548	ENSLCAP00010027612	Caspase 3, apoptosis-related cysteine peptidase b; Belongs to the peptidase C14A family.	Uncharacterized protein.	0.440
CASP3	LOC108876532	ENSLCAP00010058548	ENSLCAP00010047401	Caspase 3, apoptosis-related cysteine peptidase b; Belongs to the peptidase C14A family.	Uncharacterized protein.	0.943
CASP3	LOC108880245	ENSLCAP00010058548	ENSLCAP00010002139	Caspase 3, apoptosis-related cysteine peptidase b; Belongs to the peptidase C14A family.	Uncharacterized protein.	0.440
CASP3	LOC108893387	ENSLCAP00010058548	ENSLCAP00010021098	Caspase 3, apoptosis-related cysteine peptidase b; Belongs to the peptidase C14A family.	Uncharacterized protein.	0.970
CASP3	casp2	ENSLCAP00010058548	ENSLCAP00010021664	Caspase 3, apoptosis-related cysteine peptidase b; Belongs to the peptidase C14A family.	Uncharacterized protein; Belongs to the peptidase C14A family.	0.519
CASP3	casp9	ENSLCAP00010058548	ENSLCAP00010059818	Caspase 3, apoptosis-related cysteine peptidase b; Belongs to the peptidase C14A family.	Uncharacterized protein; Belongs to the peptidase C14A family.	0.973
CASP3	diablo	ENSLCAP00010058548	ENSLCAP00010027680	Caspase 3, apoptosis-related cysteine peptidase b; Belongs to the peptidase C14A family.	Uncharacterized protein.	0.440
CASP3	xiap	ENSLCAP00010058548	ENSLCAP00010009784	Caspase 3, apoptosis-related cysteine peptidase b; Belongs to the peptidase C14A family.	RING-type domain-containing protein.	0.982
ENSLCAP00010030057	CASP3	ENSLCAP00010030057	ENSLCAP00010058548	Uncharacterized protein.	Caspase 3, apoptosis-related cysteine peptidase b; Belongs to the peptidase C14A family.	0.719
ENSLCAP00010030057	ENSLCAP00010033948	ENSLCAP00010030057	ENSLCAP00010033948	Uncharacterized protein.	Apoptotic protease-activating factor 1; Oligomeric Apaf-1 mediates the cytochrome c-dependent autocatalytic activation of pro-caspase-9 (Apaf-3), leading to the activation of caspase-3 and apoptosis. This activation requires ATP.	0.757
ENSLCAP00010030057	ENSLCAP00010037861	ENSLCAP00010030057	ENSLCAP00010037861	Uncharacterized protein.	Caspase 3, apoptosis-related cysteine peptidase a; Belongs to the peptidase C14A family.	0.719
ENSLCAP00010030057	LOC108876072	ENSLCAP00010030057	ENSLCAP00010027612	Uncharacterized protein.	Uncharacterized protein.	0.800
ENSLCAP00010030057	LOC108880245	ENSLCAP00010030057	ENSLCAP00010002139	Uncharacterized protein.	Uncharacterized protein.	0.800
ENSLCAP00010030057	LOC108893387	ENSLCAP00010030057	ENSLCAP00010021098	Uncharacterized protein.	Uncharacterized protein.	0.900
ENSLCAP00010030057	casp2	ENSLCAP00010030057	ENSLCAP00010021664	Uncharacterized protein.	Uncharacterized protein; Belongs to the peptidase C14A family.	0.706
ENSLCAP00010030057	casp9	ENSLCAP00010030057	ENSLCAP00010059818	Uncharacterized protein.	Uncharacterized protein; Belongs to the peptidase C14A family.	0.848