61 items (Lates calcarifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Sqstm1	Sequestosome 1. (341 aa)
	Map1lc3a	Microtubule-associated protein 1 light chain 3 alpha. (112 aa)
	LOC108877485	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (401 aa)
	ENSLCAP00010006385	Beclin 1, autophagy related. (432 aa)
	LOC108898240	Uncharacterized protein. (364 aa)
	ENSLCAP00010006662	PDLIM1 interacting kinase 1 like; Belongs to the protein kinase superfamily. (330 aa)
	GABARAPL2	GABA type A receptor associated protein like 2. (135 aa)
	LOC108891182	Autophagy protein 5; Involved in autophagic vesicle formation. (314 aa)
	LOC108883363	Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family. (810 aa)
	rb1cc1	ATG11 domain-containing protein. (1651 aa)
	ulk2	Protein kinase domain-containing protein. (1040 aa)
	LOC108895848	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (402 aa)
	LOC108900509	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (429 aa)
	gabarap	Uncharacterized protein. (122 aa)
	atg3	Autophagy-related protein 3. (318 aa)
	LOC108884012	WD_REPEATS_REGION domain-containing protein. (612 aa)
	ENSLCAP00010018801	WD_REPEATS_REGION domain-containing protein. (394 aa)
	LOC108896745	Autophagy_act_C domain-containing protein. (243 aa)
	ENSLCAP00010019157	Neighbor of brca1 gene 1b. (1011 aa)
	ENSLCAP00010019605	WD repeat domain, phosphoinositide interacting 1. (349 aa)
	Gsap	Uncharacterized protein. (567 aa)
	ENSLCAP00010020326	Uncharacterized protein. (123 aa)
	Pik3c3	Phosphatidylinositol 3-kinase catalytic subunit type 3. (879 aa)
	Wipi2	WD repeat domain, phosphoinositide interacting 2. (430 aa)
	Atg12	Uncharacterized protein. (127 aa)
	rubcn	RUN domain-containing protein. (960 aa)
	LOC108887330	Uncharacterized protein. (117 aa)
	Atg4c	Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy; Belongs to the peptidase C54 family. (471 aa)
	Atg4b	Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy; Belongs to the peptidase C54 family. (398 aa)
	ILRUN	N_BRCA1_IG domain-containing protein. (293 aa)
	LOC108879275	Protein kinase domain-containing protein. (1026 aa)
	ENSLCAP00010024687	N_BRCA1_IG domain-containing protein. (606 aa)
	map1lc3c	Uncharacterized protein. (128 aa)
	ENSLCAP00010025602	Autophagy protein 5; Involved in autophagic vesicle formation. (178 aa)
	WIPI1	WD repeat domain, phosphoinositide interacting 1. (405 aa)
	ENSLCAP00010029379	Tectonin beta-propeller repeat containing 1b. (1112 aa)
	ENSLCAP00010031439	Microtubule-associated protein 1 light chain 3 beta. (135 aa)
	ENSLCAP00010034154	UV radiation resistance associated gene. (669 aa)
	atg101	Uncharacterized protein. (218 aa)
	LOC108877485-2	Serine/threonine-protein kinase 35-like. (401 aa)
	ENSLCAP00010034402	Protein kinase domain-containing protein. (65 aa)
	ENSLCAP00010035056	Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family. (888 aa)
	ENSLCAP00010038893	GABA(A) receptor-associated protein like 2. (157 aa)
	ENSLCAP00010039973	ATG10 autophagy related 10 homolog (S. cerevisiae). (191 aa)
	Wdr45b	WD repeat domain 45B. (334 aa)
	atg13	Autophagy-related protein 13; Belongs to the ATG13 family. Metazoan subfamily. (541 aa)
	Atg2a	Autophagy related 2A. (1981 aa)
	ATG2B	Uncharacterized protein. (2076 aa)
	LOC108898650	Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy; Belongs to the peptidase C54 family. (435 aa)
	atg7	Uncharacterized protein. (738 aa)
	LOC108872487	Uncharacterized protein. (136 aa)
	ENSLCAP00010048294	Tectonin beta-propeller repeat containing 2. (914 aa)
	nrbf2	Uncharacterized protein. (310 aa)
	Wdr45	WD repeat domain 45. (359 aa)
	ENSLCAP00010051333	Unc-51 like autophagy activating kinase 1a. (797 aa)
	LOC108875953	Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy; Belongs to the peptidase C54 family. (499 aa)
	ENSLCAP00010055863	Si:dkey-10o6.2; Belongs to the iron/ascorbate-dependent oxidoreductase family. (301 aa)
	Ulk3	Protein kinase domain-containing protein. (135 aa)
	atg14	Galectin domain-containing protein. (555 aa)
	ENSLCAP00010060032	Neighbor of brca1 gene 1a. (685 aa)
	epg5	Uncharacterized protein. (2593 aa)

Your Current Organism:

Lates calcarifer

NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATG2B	Atg12	ENSLCAP00010043755	ENSLCAP00010021188	Uncharacterized protein.	Uncharacterized protein.	0.574
ATG2B	Atg2a	ENSLCAP00010043755	ENSLCAP00010043208	Uncharacterized protein.	Autophagy related 2A.	0.909
ATG2B	Atg4b	ENSLCAP00010043755	ENSLCAP00010022767	Uncharacterized protein.	Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy; Belongs to the peptidase C54 family.	0.585
ATG2B	ENSLCAP00010006385	ENSLCAP00010043755	ENSLCAP00010006385	Uncharacterized protein.	Beclin 1, autophagy related.	0.574
ATG2B	ENSLCAP00010006662	ENSLCAP00010043755	ENSLCAP00010006662	Uncharacterized protein.	PDLIM1 interacting kinase 1 like; Belongs to the protein kinase superfamily.	0.611
ATG2B	ENSLCAP00010019157	ENSLCAP00010043755	ENSLCAP00010019157	Uncharacterized protein.	Neighbor of brca1 gene 1b.	0.505
ATG2B	ENSLCAP00010019605	ENSLCAP00010043755	ENSLCAP00010019605	Uncharacterized protein.	WD repeat domain, phosphoinositide interacting 1.	0.706
ATG2B	ENSLCAP00010024687	ENSLCAP00010043755	ENSLCAP00010024687	Uncharacterized protein.	N_BRCA1_IG domain-containing protein.	0.505
ATG2B	ENSLCAP00010025602	ENSLCAP00010043755	ENSLCAP00010025602	Uncharacterized protein.	Autophagy protein 5; Involved in autophagic vesicle formation.	0.424
ATG2B	ENSLCAP00010034154	ENSLCAP00010043755	ENSLCAP00010034154	Uncharacterized protein.	UV radiation resistance associated gene.	0.479
ATG2B	ENSLCAP00010034402	ENSLCAP00010043755	ENSLCAP00010034402	Uncharacterized protein.	Protein kinase domain-containing protein.	0.611
ATG2B	ENSLCAP00010035056	ENSLCAP00010043755	ENSLCAP00010035056	Uncharacterized protein.	Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family.	0.660
ATG2B	ENSLCAP00010039973	ENSLCAP00010043755	ENSLCAP00010039973	Uncharacterized protein.	ATG10 autophagy related 10 homolog (S. cerevisiae).	0.414
ATG2B	ENSLCAP00010051333	ENSLCAP00010043755	ENSLCAP00010051333	Uncharacterized protein.	Unc-51 like autophagy activating kinase 1a.	0.807
ATG2B	ENSLCAP00010060032	ENSLCAP00010043755	ENSLCAP00010060032	Uncharacterized protein.	Neighbor of brca1 gene 1a.	0.505
ATG2B	LOC108877485	ENSLCAP00010043755	ENSLCAP00010005942	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.611
ATG2B	LOC108877485-2	ENSLCAP00010043755	ENSLCAP00010034247	Uncharacterized protein.	Serine/threonine-protein kinase 35-like.	0.611
ATG2B	LOC108879275	ENSLCAP00010043755	ENSLCAP00010024436	Uncharacterized protein.	Protein kinase domain-containing protein.	0.979
ATG2B	LOC108883363	ENSLCAP00010043755	ENSLCAP00010009423	Uncharacterized protein.	Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family.	0.660
ATG2B	LOC108891182	ENSLCAP00010043755	ENSLCAP00010009358	Uncharacterized protein.	Autophagy protein 5; Involved in autophagic vesicle formation.	0.424