11 items (Lates calcarifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Map1lc3a	Microtubule-associated protein 1 light chain 3 alpha. (112 aa)
	LOC108891182	Autophagy protein 5; Involved in autophagic vesicle formation. (314 aa)
	gabarap	Uncharacterized protein. (122 aa)
	atg3	Autophagy-related protein 3. (318 aa)
	LOC108884012	WD_REPEATS_REGION domain-containing protein. (612 aa)
	Wipi2	WD repeat domain, phosphoinositide interacting 2. (430 aa)
	Atg12	Uncharacterized protein. (127 aa)
	Atg4b	Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy; Belongs to the peptidase C54 family. (398 aa)
	ENSLCAP00010038893	GABA(A) receptor-associated protein like 2. (157 aa)
	atg7	Uncharacterized protein. (738 aa)
	ENSLCAP00010051333	Unc-51 like autophagy activating kinase 1a. (797 aa)

Your Current Organism:

Lates calcarifer

NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Atg12	Atg4b	ENSLCAP00010021188	ENSLCAP00010022767	Uncharacterized protein.	Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy; Belongs to the peptidase C54 family.	0.713
Atg12	ENSLCAP00010038893	ENSLCAP00010021188	ENSLCAP00010038893	Uncharacterized protein.	GABA(A) receptor-associated protein like 2.	0.984
Atg12	ENSLCAP00010051333	ENSLCAP00010021188	ENSLCAP00010051333	Uncharacterized protein.	Unc-51 like autophagy activating kinase 1a.	0.881
Atg12	LOC108884012	ENSLCAP00010021188	ENSLCAP00010018712	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.993
Atg12	LOC108891182	ENSLCAP00010021188	ENSLCAP00010009358	Uncharacterized protein.	Autophagy protein 5; Involved in autophagic vesicle formation.	0.998
Atg12	Map1lc3a	ENSLCAP00010021188	ENSLCAP00010004892	Uncharacterized protein.	Microtubule-associated protein 1 light chain 3 alpha.	0.853
Atg12	Wipi2	ENSLCAP00010021188	ENSLCAP00010020957	Uncharacterized protein.	WD repeat domain, phosphoinositide interacting 2.	0.931
Atg12	atg3	ENSLCAP00010021188	ENSLCAP00010018189	Uncharacterized protein.	Autophagy-related protein 3.	0.999
Atg12	atg7	ENSLCAP00010021188	ENSLCAP00010043910	Uncharacterized protein.	Uncharacterized protein.	0.999
Atg12	gabarap	ENSLCAP00010021188	ENSLCAP00010015932	Uncharacterized protein.	Uncharacterized protein.	0.984
Atg4b	Atg12	ENSLCAP00010022767	ENSLCAP00010021188	Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy; Belongs to the peptidase C54 family.	Uncharacterized protein.	0.713
Atg4b	ENSLCAP00010038893	ENSLCAP00010022767	ENSLCAP00010038893	Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy; Belongs to the peptidase C54 family.	GABA(A) receptor-associated protein like 2.	0.996
Atg4b	ENSLCAP00010051333	ENSLCAP00010022767	ENSLCAP00010051333	Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy; Belongs to the peptidase C54 family.	Unc-51 like autophagy activating kinase 1a.	0.910
Atg4b	LOC108884012	ENSLCAP00010022767	ENSLCAP00010018712	Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy; Belongs to the peptidase C54 family.	WD_REPEATS_REGION domain-containing protein.	0.430
Atg4b	LOC108891182	ENSLCAP00010022767	ENSLCAP00010009358	Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy; Belongs to the peptidase C54 family.	Autophagy protein 5; Involved in autophagic vesicle formation.	0.604
Atg4b	Map1lc3a	ENSLCAP00010022767	ENSLCAP00010004892	Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy; Belongs to the peptidase C54 family.	Microtubule-associated protein 1 light chain 3 alpha.	0.942
Atg4b	Wipi2	ENSLCAP00010022767	ENSLCAP00010020957	Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy; Belongs to the peptidase C54 family.	WD repeat domain, phosphoinositide interacting 2.	0.718
Atg4b	atg3	ENSLCAP00010022767	ENSLCAP00010018189	Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy; Belongs to the peptidase C54 family.	Autophagy-related protein 3.	0.858
Atg4b	atg7	ENSLCAP00010022767	ENSLCAP00010043910	Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy; Belongs to the peptidase C54 family.	Uncharacterized protein.	0.764
Atg4b	gabarap	ENSLCAP00010022767	ENSLCAP00010015932	Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy; Belongs to the peptidase C54 family.	Uncharacterized protein.	0.996